CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0976800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os01g0976800 NM_189506.1 - Conserved hypothetical protein 2e-4 At3g06740 zinc finger (GATA type) family protein S.X. H.G.
0.36 44.0 Os06g0595900 AK066655.1 - The start codon is not identified. 3e-2 At5g11430 zinc ion binding S.X. H.G.
0.33 38.8 Os03g0750300 9631.m05296 - Hypothetical protein 2e-16 At3g44050 kinesin motor protein-related S.X. H.G.
0.29 31.1 Os07g0617700 9635.m04266 - Viral coat and capsid protein family protein 2e+0 At5g22360 ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) S.X. H.G.
0.29 31.1 Os08g0190700 9636.m00872 - Conserved hypothetical protein 3e-10 At3g20350 unknown protein S.X. H.G.
0.23 21.2 Os09g0407600 9637.m02072 - DNA mismatch repair protein MutS, C-terminaldomain containing protein 4e-17 At4g02070 MSH6 (MUTS HOMOLOG 6) S.X. H.G.
0.23 21.2 Os07g0628600 9635.m04365 - Origin recognition complex subunit 6 familyprotein 3e-2 At1g26840 ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.6 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
66.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 9e-21 101 Os03g0831200 AK073709.1 - Zn-finger, GATA type domain containing protein 1e-1 At5g28630 glycine-rich protein C.G. S.X.
0.04 3e-8 59 Os05g0578900 AK101287.1 - Zn-finger, GATA type domain containing protein 4e-2 At3g06740 zinc finger (GATA type) family protein C.G. S.X.
0.03 2e-3 44 Os01g0922600 AK062581.1 - - 1e-2 At5g50570 squamosa promoter-binding protein, putative C.G. S.X.
0.02 1e-4 48 Os11g0473200 AK106730.1 - Ubiquitin carboxyl-terminal hydrolase 12 (EC3.1.2.15) (Ubiquitin thiolesterase 12)(Ubiquitin-specific processing protease 12)(Deubiquitinating enzyme 12) 2e-5 At2g40930 UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-4 46 Arabidopsis thaliana At3g06740 819859 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFMO - - - C.G. S.X.
0.05 3e-4 46 Glycine max Gma.9099.1.S1_at AW350281 - - 6e-3 At3g06740 zinc finger (GATA type) family protein C.G. S.X.
0.22 5e-19 93 Hordeum vulgare Contig8750_s_at Contig8750 - - 4e-2 At3g09032 unknown protein C.G. S.X.
0.06 5e-3 42 Populus trichocarpa PtpAffx.201051.1.S1_at pmrna2071 multidrug/pheromone exporter, MDR family, ABC transporter family - 3e-3 At3g49300 proline-rich family protein C.G. S.X.
0.20 7e-14 77 Triticum aestivum Ta.6726.2.S1_at CD491646 - - 4e-2 At1g31750 proline-rich family protein C.G. S.X.
0.07 4e-3 40 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.17 3e-17 87 Zea mays Zm.12666.2.S1_at AY536126.1 meg6 protein - 4e-2 At1g60650 glycine-rich RNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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