Gene omics information

Query gene ID	Os01g0971800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.9	Os01g0971800	AY581256.1	-	Myb, DNA-binding domain containing protein	3e-18	At5g59570	myb family transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.72	89.8	Os01g0702000	AK065414.1	-	Conserved hypothetical protein	4e-5	At1g75380	wound-responsive protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.70	88.4	Os04g0675400	AK068186.1	-	Heat shock protein DnaJ family protein	9e-1	At2g28710	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0774100	9630.m05279	-	Thioredoxin-related domain containing protein	4e-3	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os08g0425200	AK099569.1	-	Conserved hypothetical protein	1e-1	At4g11870	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.65	83.8	Os10g0533100	AK111957.1	-	Conserved hypothetical protein	5e-1	At2g40020	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.65	83.8	Os07g0489800	AK068191.1	-	Ferredoxin domain containing protein	5e-1	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os12g0493900	AK121028.1	-	ARM repeat fold domain containing protein	4e-3	At1g30475	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os04g0119000	AK120328.1	-	Conserved hypothetical protein	2e+0	At3g17710	F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	77.0	Os02g0773500	AK062694.1	-	Conserved hypothetical protein	1e-3	At5g56950	NAP1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.7	99.7	GSM267999	Green leaves in F9G RILs from parents lines	GSE10872	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
22.4	99.3	GSM267998	Yellow leaves in F9Y RILs from parents lines	GSE10872	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
16.6	98.8	GSM421676	XOC, 8 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.0	98.7	GSM421716	MOCK, 8 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.2	98.7	GSM421717	MOCK, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.5	98.6	GSM431940	Shoot- -Fe-P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.0	98.5	GSM421695	XOO, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.3	98.4	GSM431939	Shoot- -Fe-P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.2	98.3	GSM421675	XOC, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.4	98.2	GSM421677	XOC, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-24	113	Os01g0844900	AK066659.1	-	Myb, DNA-binding domain containing protein	1e-3	At3g25640	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-2	42	Os12g0640500	AK070701.1	-	Na+/H+ antiporter-like protein	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-2	40	Os04g0587500	AK060241.1	-	Conserved hypothetical protein	2e-1	At5g56470	FAD-dependent oxidoreductase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-2	40	Os01g0915600	AK101063.1	-	TA1 protein (Fragment)	2e-11	At3g07340	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-2	40	Os03g0655500	9631.m04384	-	PapD-like domain containing protein	2e-1	At4g31580	SRZ-22	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	8e-2	40	Os08g0542900	AK074001.1	-	Lupus La protein family protein	2e-1	At2g43970	La domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-18	93	Arabidopsis thaliana	At5g59570	836076	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	4e-52	206	Glycine max	GmaAffx.9286.1.S1_s_at	BI969788	-	-	2e-16	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.23	2e-104	379	Hordeum vulgare	Contig13480_at	Contig13480	-	-	1e-10	At5g59570	myb family transcription factor	C.G.	S.X.	Please select
0.07	4e-6	54	Populus trichocarpa	PtpAffx.200774.1.S1_at	pmrna1498	hypothetical protein	-	1e-6	At3g46640	PCL1 (PHYTOCLOCK 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-18	93	Triticum aestivum	Ta.7891.1.A1_at	CA654666	-	-	2e+0	At3g62670	ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20)	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1606551_at	CF211871	hypothetical protein LOC100255969	-	6e-30	At4g25660	unknown protein	C.G.	S.X.	Please select
0.09	3e-19	95	Zea mays	Zm.15210.1.A1_at	BM269011	ARR1 protein-like	-	1e-3	At5g59570	myb family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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