CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0968400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os01g0968400 BE039193 - Root cap family protein 1e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related S.X. H.G.
0.63 82.7 Os01g0248000 AK073588.1 - Stigma-specific protein Stig1 family protein 5e-1 At1g67035 unknown protein S.X. H.G.
0.63 82.7 Os09g0440850 9637.m02353 - - 2e+0 At5g17510 unknown protein S.X. H.G.
0.53 71.3 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related S.X. H.G.
0.52 69.6 Os05g0286100 AK108829.1 - Transcriptional regulator SUPERMAN 1e-1 At4g17810 nucleic acid binding / transcription factor/ zinc ion binding S.X. H.G.
0.50 68.0 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
0.48 63.7 Os09g0420300 AK120582.1 - Methyladenine glycosylase family protein 1e-5 At1g80850 methyladenine glycosylase family protein S.X. H.G.
0.48 63.7 Os07g0101800 9635.m00018 - - 2e-3 At5g06070 RBE (RABBIT EARS) S.X. H.G.
0.43 55.4 Os01g0719600 AK070988.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-6 At3g24450 copper-binding family protein S.X. H.G.
0.43 55.4 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.5 99.2 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
21.1 99.2 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
19.0 99.0 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.7 98.6 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.5 98.6 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.2 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.5 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-77 291 Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.33 7e-76 286 Os01g0968300 AK122054.1 - Root cap family protein 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.20 8e-14 79 Os05g0552600 9633.m04465 - Extensin-like region family protein 5e-1 At5g48170 SLY2 (SLEEPY2) C.G. S.X.
0.19 2e-88 327 Os04g0249700 AK061137.1 - Hypothetical protein 1e-1 At2g34224 unknown protein C.G. S.X.
0.07 5e-21 103 Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.04 2e-2 42 Os03g0125100 9631.m00248 - Beta-carotene hydroxylase 1e-11 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) C.G. S.X.
0.04 2e-2 42 Os04g0410400 AK108077.1 - Root cap family protein 1e+1 At5g13200 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.CL898Contig1_at PsAffx.CL898Contig1 - - 2e+1 At5g59990 - C.G. S.X.
0.22 4e-28 125 Hordeum vulgare EBro08_SQ007_P13_at EBro08_SQ007_P13 - - 4e+0 At2g22060 - C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.224029.1.S1_x_at pmrna42263 hypothetical protein - 1e+0 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.33 1e-38 161 Triticum aestivum Ta.26169.1.A1_at CD452458 - - 1e+0 At1g78170 unknown protein C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.27 3e-59 228 Zea mays Zm.9635.1.A1_at BM334297 - - 2e+1 At5g55940 emb2731 (embryo defective 2731) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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