Gene omics information

Query gene ID	Os01g0968300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	76.3	Os01g0968300	AK122054.1	-	Root cap family protein	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0706900	AK059034.1	-	Alpha/beta hydrolase family protein	1e-2	At4g36610	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os05g0280500	AK111471.1	-	Phospholipid/glycerol acyltransferase familyprotein	2e-8	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os10g0193100	CA755860	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	1e+0	At2g22800	HAT9	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os08g0245200	AK069932.1	-	4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)	3e-10	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os10g0532600	AK060309.1	-	Uncharacterized plant-specific domain containingprotein	6e-1	At1g48750	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os09g0293500	9637.m00942	-	BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase)	9e-15	At3g13380	BRL3 (BRI1-LIKE 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	31.1	Os05g0245300	AB091471.1	-	Protein of unknown function DUF588 family protein	7e+0	Atcg00790	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.8	99.7	GSM159179	Root, 7-day-old Seedling, biological rep 3	GSE6893	Expression data for reproductive development in rice
29.1	99.7	GSM359911	IR29 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.9	99.3	GSM359918	IR63731 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.8	99.2	GSM359907	FL478 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.8	99.0	GSM359910	IR29 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
17.8	98.9	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
17.5	98.9	GSM359922	Pokkali root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.1	98.7	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.0	98.7	GSM359905	FL478 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.5	98.6	GSM359916	IR63731 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	1197	Os01g0968200	NM_189425.1	-	Root cap family protein	2e+0	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	8e-76	286	Os01g0968400	BE039193	-	Root cap family protein	1e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	3e-29	131	Os05g0552600	9633.m04465	-	Extensin-like region family protein	5e-1	At5g48170	SLY2 (SLEEPY2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	2e-11	71	Os04g0410400	AK108077.1	-	Root cap family protein	1e+1	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	8e-33	143	Os11g0151200	AK106826.1	-	Conserved hypothetical protein	2e-1	At5g54370	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-1	38	Arabidopsis thaliana	At3g19430	821477	late embryogenesis abundant protein-related / LEA protein-related	F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	Gma.8916.2.S1_x_at	CA802688	-	-	5e-19	At2g33220	-	C.G.	S.X.	Please select
0.26	3e-63	242	Hordeum vulgare	Contig21025_at	Contig21025	-	-	7e-2	At2g16340	unknown protein	C.G.	S.X.	Please select
0.07	2e-8	61	Populus trichocarpa	PtpAffx.204686.1.S1_at	pmrna9231	hypothetical protein	-	2e-18	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	8e-124	444	Triticum aestivum	Ta.8784.1.S1_at	CD452671	-	-	3e+0	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1618069_at	CD720173	-	-	6e+0	At3g55254	-	C.G.	S.X.	Please select
0.34	9e-88	323	Zea mays	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006810	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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