CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0968200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related S.X. H.G.
0.43 55.4 Os12g0431700 BX900645 - ab initio prediction with EST support 5e+0 At4g33450 MYB69 (MYB DOMAIN PROTEIN 69) S.X. H.G.
0.36 44.0 Os09g0295400 9637.m00961 - - 1e+0 At4g16610 zinc finger (C2H2 type) family protein S.X. H.G.
0.21 17.9 Os04g0183300 AK100045.1 - Amidase family protein 1e+0 At4g34880 amidase family protein S.X. H.G.
0.19 15.1 Os11g0270201 9639.m01552 - - 9e-2 At5g25460 unknown protein S.X. H.G.
0.17 12.6 Os04g0175500 9632.m00828 - Transferase family protein 3e+0 At2g27180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
37.9 99.8 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
20.3 99.1 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
16.5 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1197 Os01g0968300 AK122054.1 - Root cap family protein 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.37 1e-77 291 Os01g0968400 BE039193 - Root cap family protein 1e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.25 1e-24 115 Os05g0552600 9633.m04465 - Extensin-like region family protein 5e-1 At5g48170 SLY2 (SLEEPY2) C.G. S.X.
0.22 7e-14 79 Os04g0410400 AK108077.1 - Root cap family protein 1e+1 At5g13200 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.08 8e-26 119 Os11g0151200 AK106826.1 - Conserved hypothetical protein 2e-1 At5g54370 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e+0 34 Arabidopsis thaliana At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA - - - C.G. S.X.
0.02 3e+0 34 Glycine max PsAffx.psHB044xD18f_s_at PsAffx.psHB044xD18f - - 2e-1 At4g36090 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.38 4e-74 278 Hordeum vulgare Contig21025_at Contig21025 - - 7e-2 At2g16340 unknown protein C.G. S.X.
0.09 3e-6 54 Populus trichocarpa PtpAffx.204686.1.S1_at pmrna9231 hypothetical protein - 2e-18 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.46 7e-99 361 Triticum aestivum Ta.8784.1.S1_at CD452671 - - 3e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1615422_at CB834352 - - 1e+0 At4g19185 integral membrane family protein C.G. S.X.
0.40 2e-75 282 Zea mays Zm.52.1.A1_at AB021175.1 root cap protein 1 - 2e+0 At5g60520 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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