CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0966200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0966200 AK058564.1 - Protein of unknown function YGGT family protein 4e-1 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) S.X. H.G.
0.73 91.1 Os02g0152900 AK061136.1 - Hypothetical protein 2e-3 At1g75550 glycine-rich protein S.X. H.G.
0.67 87.2 Os03g0118600 AK065477.1 - Dihydrodipicolinate reductase-like protein 2e-7 At5g52100 crr1 (chlororespiration reduction 1) S.X. H.G.
0.55 73.7 Os04g0544400 9632.m04429 - TPR-like domain containing protein 2e-1 At5g66815 unknown protein S.X. H.G.
0.36 44.0 Os01g0940600 AK070587.1 - Conserved hypothetical protein 2e+0 At5g28610 - S.X. H.G.
0.35 41.7 Os03g0747700 AK058795.1 - Conserved hypothetical protein 4e-1 At5g65880 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.8 99.1 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
19.3 99.0 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.0 98.5 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.1 98.3 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.1 97.9 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.2 97.7 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
7.9 97.6 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.8 97.3 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.5 97.2 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.5 97.2 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Os01g0811500 9629.m05859 - - 2e+0 At5g65480 unknown protein C.G. S.X.
0.02 3e-3 44 Os03g0237200 9631.m01271 - Zn-finger, C2H2 type domain containing protein 2e-7 At1g68130 AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14) C.G. S.X.
0.02 1e-2 42 Os04g0448300 AK109494.1 - Peptidase A1, pepsin family protein 1e-2 At2g42980 aspartyl protease family protein C.G. S.X.
0.02 1e-2 42 Os12g0422100 9640.m02227 - - 4e-2 At4g33310 unknown protein C.G. S.X.
0.01 3e-3 44 Os07g0163900 NM_186433.1 - TPR-like domain containing protein 5e-9 At3g61170 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e-2 42 Os05g0454200 AK101945.1 - Protein of unknown function DUF315 domaincontaining protein 1e-15 At4g38430 ROPGEF1 C.G. S.X.
0.01 1e-2 42 Os08g0243900 AK121452.1 - Conserved hypothetical protein 7e-2 At3g55880 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At5g60860 836207 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAV - - - C.G. S.X.
0.03 5e-1 36 Glycine max PsAffx.CL1666Contig1_at PsAffx.CL1666Contig1 - - 4e+0 At5g44585 unknown protein C.G. S.X.
0.03 5e-2 38 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.158827.2.S1_a_at BU811721 hypothetical protein - 2e-8 At1g29120 unknown protein C.G. S.X.
0.04 6e-3 42 Triticum aestivum TaAffx.7497.1.S1_at CA657776 - - 8e+0 At5g20130 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.03 1e-2 40 Zea mays Zm.1861.1.S1_at CF009566 - - 2e+0 At5g45040 cytochrome c6 (ATC6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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