CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0957100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.67 87.2 Os01g0326000 AK061371.1 - Peroxidase 1 2e-1 At1g44970 peroxidase, putative S.X. H.G.
0.67 87.2 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
0.60 79.7 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.60 79.7 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.33 38.8 Os07g0145400 AK103262.1 - Protein kinase domain containing protein 4e-14 At4g20940 leucine-rich repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 98.8 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.0 98.3 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.0 97.8 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.9 97.8 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
8.2 97.7 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
8.1 97.7 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.7 97.6 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
7.7 97.6 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.6 97.5 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
7.5 97.5 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-4 50 Os04g0132500 AK121779.1 - Protein kinase domain containing protein 5e-4 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 2e-7 59 Os02g0110600 AK061840.1 - Conserved hypothetical protein 6e-5 At5g61350 protein kinase family protein C.G. S.X.
0.03 1e-5 54 Os05g0169600 9633.m00690 - Protein kinase domain containing protein 4e-4 At4g04510 protein kinase family protein C.G. S.X.
0.02 9e-7 57 Os06g0638500 9634.m04167 - Protein kinase domain containing protein 3e-4 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) C.G. S.X.
0.01 9e-7 57 Os06g0638400 AK109644.1 - Hypothetical protein 7e-1 At4g37250 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.01 2e-4 50 Os03g0387300 AK107546.1 - VQ domain containing protein 1e-1 At1g35830 VQ motif-containing protein C.G. S.X.
0.01 2e-4 50 Os04g0132400 AK110400.1 - - 6e-3 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 9e-4 48 Os12g0498300 CR280249 - WD40-like domain containing protein 2e-22 At3g54190 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At3g45230 823659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBMFVA - - - C.G. S.X.
0.01 2e-3 46 Glycine max HgAffx.17490.1.S1_at CB824290 - - 5e+0 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.03 1e-2 42 Hordeum vulgare Contig10148_at Contig10148 - - 2e-22 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.220056.1.S1_x_at pmrna36332 hypothetical protein - 4e-2 At5g46730 glycine-rich protein C.G. S.X.
0.10 4e-38 161 Triticum aestivum Ta.19575.1.A1_at CA653571 - - 1e+0 At5g15960 KIN1 C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1607812_at BQ799035 hypothetical protein LOC100252911 - 1e-1 At4g34800 auxin-responsive family protein C.G. S.X.
0.01 8e-4 46 Zea mays Zm.4598.1.S1_at BE051841 - - 2e-1 At2g15830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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