CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0952500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0952500 AK101721.1 - Two-component response regulator ARR9 (Responsereactor 4) 9e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) S.X. H.G.
0.67 87.2 Os11g0143300 AK058585.1 - - 5e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) S.X. H.G.
0.50 68.0 Os04g0673300 AK059734.1 - ZmRR2 protein (Response regulator 2) 8e-3 At5g19090 heavy-metal-associated domain-containing protein S.X. H.G.
0.01 0.5 Os02g0696700 AK060255.1 - Jumonji domain containing protein 2C (Geneamplified in squamous cell carcinoma 1 protein) (GASC-1protein) 3e-13 At5g46910 transcription factor jumonji (jmj) family protein S.X. H.G.
0.00 0.1 Os09g0327400 AK068681.1 - Aldose 1-epimerase family protein 7e-7 At5g66530 aldose 1-epimerase family protein S.X. H.G.
0.00 0.1 Os03g0376100 AK058961.1 - Cys/Met metabolism pyridoxal-phosphate-dependentenzymes family protein 2e-4 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.7 99.5 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
23.3 99.4 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
19.7 99.1 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
17.6 98.9 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
14.8 98.6 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
13.4 98.5 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.9 98.3 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.7 98.0 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.0 97.0 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
5.7 96.9 GSM154941 Root_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-20 101 Os11g0143300 AK058585.1 - - 5e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.10 2e-27 125 Os04g0494400 AK109703.1 - ZmRR2 protein (Response regulator 2) 3e-1 At5g46030 unknown protein C.G. S.X.
0.06 1e-7 59 Os04g0524300 AK106426.1 - ZmRR2 protein (Response regulator 2) 1e-1 At2g40830 RHC1A C.G. S.X.
0.03 7e-12 73 Os04g0540500 AK120355.1 - Hypothetical protein 2e-1 At2g21830 DC1 domain-containing protein C.G. S.X.
0.02 4e-4 48 Os01g0179300 NM_189536.1 - Conserved hypothetical protein 1e-2 At2g25670 unknown protein C.G. S.X.
0.02 7e-3 44 Os03g0668900 AK108369.1 - Conserved hypothetical protein 6e-1 At3g16770 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) C.G. S.X.
0.01 2e-3 46 Os07g0253900 9635.m01494 - - 1e-3 At3g50550 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 9e-7 56 Arabidopsis thaliana At3g57040 824871 ARR9 (RESPONSE REGULATOR 9) response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2 - - - C.G. S.X.
0.14 2e-2 42 Glycine max GmaAffx.35033.1.S1_at BI969048 - - 6e-3 At2g41310 ATRR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.17 1e-16 87 Hordeum vulgare Contig5953_at Contig5953 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) C.G. S.X.
0.10 2e-11 71 Populus trichocarpa PtpAffx.213255.1.S1_s_at pmrna25930 type-a response regulator - 3e-37 At2g41310 ATRR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.17 3e-16 87 Triticum aestivum Ta.10408.1.S1_at CN009026 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1608140_at CF211124 hypothetical protein LOC100258759 - 2e-16 At3g48100 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) C.G. S.X.
0.27 5e-56 218 Zea mays Zm.13810.1.S1_at AB042267.1 hypothetical protein LOC100191253 - 6e-8 At3g56380 ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009735 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
C GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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