CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0951000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0951000 AK111493.1 - The start codon is not identified. 3e-57 At5g13480 FY S.X. H.G.
0.71 89.6 Os08g0531200 AK120362.1 - WD40-like domain containing protein 4e-4 At2g47450 CAO (CHAOS) S.X. H.G.
0.53 71.3 Os01g0746200 AK072636.1 - Nup85 nucleoporin family protein 4e-7 At4g32910 - S.X. H.G.
0.48 63.7 Os01g0375100 AK102596.1 - DnAJ-like protein slr0093 5e-1 At4g12540 unknown protein S.X. H.G.
0.46 60.9 Os11g0643700 CB632735 - Nuclear pore protein 84/107 family protein 6e+0 Atmg00150 - S.X. H.G.
0.44 58.1 Os03g0423800 AK069431.1 - Conserved hypothetical protein 3e-1 At2g03070 unknown protein S.X. H.G.
0.39 48.3 Os11g0572100 AB109200.1 - DNA ligase (EC 6.5.1.2) 1e-20 At5g22010 AtRFC1 (replication factor C 1) S.X. H.G.
0.39 48.3 Os08g0335000 CF330163 - Pre-mRNA splicing factor RNA helicase PRP43(Helicase JA1) 8e-21 At1g32490 ESP3 (ENHANCED SILENCING PHENOTYPE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 97.9 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
8.4 97.7 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.2 97.1 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.1 97.1 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.1 97.1 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.5 96.8 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
5.5 96.8 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
5.3 96.7 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.3 96.7 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 42 Os01g0807401 9629.m05823 - - 6e+0 At5g11500 unknown protein C.G. S.X.
0.01 1e-2 44 Os03g0789500 AK059333.1 - Hypothetical protein 6e-1 At4g10740 F-box family protein C.G. S.X.
0.01 1e-2 44 Os03g0800200 D42427 - Argonaute protein 3e-11 At2g27880 AGO5 (ARGONAUTE 5) C.G. S.X.
0.01 4e-2 42 Os02g0106600 AK107830.1 - Zn-finger, RING domain containing protein 7e+0 Atmg01350 - C.G. S.X.
0.01 4e-2 42 Os05g0350900 9633.m02590 - Myb, DNA-binding domain containing protein 1e-1 At5g67300 MYBR1 (MYB DOMAIN PROTEIN R1) C.G. S.X.
0.01 4e-2 42 Os05g0485000 AK106318.1 - Conserved hypothetical protein 2e+0 At1g03600 photosystem II family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-57 224 Arabidopsis thaliana At5g13480 831191 FY Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. - - - C.G. S.X.
0.14 3e-33 145 Glycine max Gma.319.1.S1_at BI970504 - - 3e-40 At5g13480 FY C.G. S.X.
0.38 2e-65 250 Hordeum vulgare Contig10278_at Contig10278 - - 3e+0 At1g12080 unknown protein C.G. S.X.
0.37 4e-94 347 Populus trichocarpa PtpAffx.200135.1.S1_at pmrna248 hypothetical protein - 1e-94 At5g13480 FY C.G. S.X.
0.02 9e-2 40 Triticum aestivum TaAffx.111549.1.S1_at CA638084 - - 4e+0 At3g50550 unknown protein C.G. S.X.
0.02 1e-1 38 Vitis vinifera 1611799_at CB982194 hypothetical protein LOC100255639 - 4e-4 At5g06700 unknown protein C.G. S.X.
0.07 1e-8 61 Zea mays Zm.17727.1.S1_at CF021469 - - 5e+0 At1g50340 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009909 Any process that modulates the frequency, rate or extent of flower development.
C GO:0001700 The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster.
C GO:0031124 Any process involved in forming the mature 3' end of an mRNA molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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