CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0947000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 89.8 Os01g0947000 AK063953.1 - Beta-1,3-glucanase precursor 2e-2 At5g20560 beta-1,3-glucanase, putative S.X. H.G.
0.92 99.1 Os10g0527400 D10861.1 - Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1) 5e-1 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) S.X. H.G.
0.88 96.8 Os04g0339400 AK103553.1 - Aldo/keto reductase family protein 1e-5 At1g60690 aldo/keto reductase family protein S.X. H.G.
0.85 96.1 Os03g0283200 AF237487.2 - IN2-1 protein 2e+0 At5g02780 In2-1 protein, putative S.X. H.G.
0.74 91.4 Os01g0638000 AK103824.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22380 AtUGT85A3 (UDP-glucosyl transferase 85A3) S.X. H.G.
0.69 87.9 Os02g0755900 AK104985.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 8e-1 At1g22340 AtUGT85A7 (UDP-glucosyl transferase 85A7) S.X. H.G.
0.69 87.9 Os10g0528300 AF309378.1 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) S.X. H.G.
0.69 87.9 Os10g0530900 AF309376.1 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein S.X. H.G.
0.65 83.8 Os01g0934800 Z34270.1 - Alpha/beta hydrolase fold domain containingprotein 1e-1 At2g23580 MES4 (METHYL ESTERASE 4) S.X. H.G.
0.65 83.8 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.8 100.0 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
53.7 99.9 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
41.9 99.9 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
33.8 99.8 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
32.8 99.8 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
27.1 99.6 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
22.1 99.3 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.5 98.1 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.2 98.0 GSM302920 root_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
10.1 98.0 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 0 880 Os01g0946600 AK104139.1 - Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39)((1->3)-beta-glucan endohydrolase GV)((1->3)-beta-glucanase isoenzyme GV) (Beta-1,3-endoglucanase GV) 9e+0 At5g27860 unknown protein C.G. S.X.
0.50 0 872 Os01g0941200 NM_189714.1 - Beta-1,3-glucanase precursor 2e+0 At2g29590 thioesterase family protein C.G. S.X.
0.46 0 813 Os01g0944700 AF443600.1 - Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII) 1e-2 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.45 0 876 Os01g0946500 AU031458 - Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39)((1->3)-beta-glucan endohydrolase GV)((1->3)-beta-glucanase isoenzyme GV) (Beta-1,3-endoglucanase GV) 1e+1 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.31 1e-51 206 Os01g0944800 9629.m07089 - Beta-1,3-glucanase precursor 3e-2 At3g57270 BG1 (BETA-1,3-GLUCANASE 1) C.G. S.X.
0.28 5e-26 121 Os01g0940700 AB027428.1 - Beta-1,3-glucanase (Fragment) 4e-2 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.27 3e-55 218 Os01g0940800 AK068247.1 - Beta-1,3-glucanase precursor 1e-5 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.22 5e-32 141 Os01g0713200 AF030167.1 - Beta-1,3-glucanase precursor 2e-4 At3g57240 BG3 (BETA-1,3-GLUCANASE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 42 Arabidopsis thaliana At5g20560 832178 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO - - - C.G. S.X.
0.02 4e-1 38 Glycine max GmaAffx.68770.2.S1_at AW596467 - - 7e-5 At2g05790 glycosyl hydrolase family 17 protein C.G. S.X.
0.40 3e-73 276 Hordeum vulgare Contig1637_s_at Contig1637 1,3-beta glucan endohydrolase precursor - 1e-2 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.204891.1.S1_at pmrna9661 hypothetical protein - 4e-1 At5g41490 F-box family protein C.G. S.X.
0.34 1e-46 188 Triticum aestivum Ta.8584.1.S1_at BQ162089 - - 6e-1 At5g03120 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1619916_s_at CD715143 similar to beta-1,3-glucanase /// similar to beta-1,3-glucanase - 5e+0 At4g09647 - C.G. S.X.
0.14 8e-12 71 Zea mays Zm.791.1.S1_s_at AY111675.1 hypothetical protein LOC100280140 - 3e+0 At4g16720 60S ribosomal protein L15 (RPL15A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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