CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0946200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os01g0946200 AK071060.1 - - 2e+0 At2g01554 unknown protein S.X. H.G.
0.52 69.6 Os11g0160500 AY224425.1 - BZIP-like protein 8e-11 At1g43700 VIP1 (VIRE2-INTERACTING PROTEIN 1) S.X. H.G.
0.42 53.9 Os01g0752100 NM_191251.1 - Cyclin-like F-box domain containing protein 7e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein S.X. H.G.
0.38 46.9 Os05g0458000 AK068989.1 - Zn-finger, DHHC type domain containing protein 8e-13 At3g09320 zinc finger (DHHC type) family protein S.X. H.G.
0.37 45.0 Os10g0495300 AK103856.1 - BRO1 domain containing protein 7e-15 At1g15130 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.33 38.8 Os03g0138000 AK069986.1 - TPR-like domain containing protein 2e-2 At3g26180 CYP71B20 S.X. H.G.
0.31 34.5 Os04g0528800 AK103671.1 - Ferredoxin-thioredoxin reductase, variable chain(FTR-V) (Ferredoxin- thioredoxin reductase subunit A)(FTR-A) 4e-1 At2g05440 glycine-rich protein S.X. H.G.
0.30 32.7 Os01g0919500 AK059108.1 - Zn-finger, RING domain containing protein 2e+0 At2g01260 unknown protein S.X. H.G.
0.29 31.1 Os01g0964000 AK073599.1 - VAMP-like protein YKT61 (AtYKT61)(Geranylgeranylated protein 1) (AtGP1) 3e-15 At5g58060 YKT61 S.X. H.G.
0.26 25.6 Os04g0550500 AK070256.1 - Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase)(AGK) (N-acetyl-L- glutamate 5-phosphotransferase) 1e-2 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.6 97.5 GSM278853 KT95-418-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.4 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-24 115 Os01g0946500 AU031458 - Glucan endo-1,3-beta-glucosidase GV (EC 3.2.1.39)((1->3)-beta-glucan endohydrolase GV)((1->3)-beta-glucanase isoenzyme GV) (Beta-1,3-endoglucanase GV) 1e+1 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.04 4e-3 44 Os06g0239100 9634.m01307 - Peptidase M10A and M12B, matrixin and adamalysinfamily protein 2e-3 At2g45040 matrix metalloproteinase C.G. S.X.
0.03 1e-2 42 Os02g0173200 9630.m00720 - VQ domain containing protein 1e-5 At4g15120 VQ motif-containing protein C.G. S.X.
0.03 1e-2 42 Os02g0574800 AK108451.1 - Conserved hypothetical protein 4e-1 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) C.G. S.X.
0.02 1e-2 42 Os09g0324100 9637.m01284 - - 2e+0 At3g57390 AGL18 C.G. S.X.
0.02 1e-2 42 Os11g0633800 AK099786.1 - Cyclin-like F-box domain containing protein 3e-3 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At2g01554 6240605 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.91503.1.S1_at CF807228 - - 4e+0 At4g24026 unknown protein C.G. S.X.
0.04 1e-2 40 Hordeum vulgare Contig4897_at Contig4897 - - 8e-1 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 1e+1 32 Populus trichocarpa PtpAffx.88591.1.A1_s_at CV259964 - - 8e-1 At2g46190 - C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.57536.1.S1_at CA627341 - - 2e-1 At2g36100 integral membrane family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1615287_at CB968784 - - 4e-3 At5g61500 ATG3 C.G. S.X.
0.03 2e-1 36 Zea mays Zm.7361.1.A1_at AY108454.1 hypothetical protein LOC100272701 - 6e-1 At5g54360 zinc finger (C2H2 type) family protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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