CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0934100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0934100 AK100995.1 - C2 domain containing protein 7e-1 At5g62720 integral membrane HPP family protein S.X. H.G.
0.67 87.2 Os03g0787000 AK065950.1 - Syntaxin 1e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.50 68.0 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein S.X. H.G.
0.50 68.0 Os02g0314600 AK068924.1 - Peptidase A1, pepsin family protein 1e+0 At5g55570 unknown protein S.X. H.G.
0.44 58.1 Os03g0764100 AF332876.1 - Conserved hypothetical protein 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) S.X. H.G.
0.40 51.1 Os05g0128200 AK099898.1 - Transposable element Mu1 sequence 3e-6 At5g07500 PEI1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 97.5 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.1 97.4 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.9 97.3 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.8 97.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.8 97.3 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.5 97.2 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.5 97.2 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.3 97.2 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.3 97.2 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.1 97.1 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-21 105 Os07g0670300 AK061154.1 - C2 domain containing protein 4e-2 At3g44140 unknown protein C.G. S.X.
0.12 2e-21 105 Os07g0670200 9635.m04777 - C2 domain containing protein 1e+0 At5g10140 FLC (FLOWERING LOCUS C) C.G. S.X.
0.05 4e-7 57 Os05g0149100 AK107944.1 - C2 domain containing protein 9e-1 At4g09680 unknown protein C.G. S.X.
0.02 4e-4 48 Os06g0687200 AK058749.1 - Zn-finger, RING domain containing protein 7e-1 At4g32030 unknown protein C.G. S.X.
0.02 1e-3 46 Os05g0319100 9633.m02294 - - 9e-13 At5g01930 (1-4)-beta-mannan endohydrolase, putative C.G. S.X.
0.01 9e-5 50 Os02g0315600 AK107002.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e+0 At5g63595 FLS4 (FLAVONOL SYNTHASE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At5g62720 836393 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP - - - C.G. S.X.
0.04 7e-11 69 Glycine max Gma.4548.1.S1_at BI967918 cold-regulated protein - 2e+0 At4g15740 C2 domain-containing protein C.G. S.X.
0.48 7e-98 357 Hordeum vulgare Contig12807_at Contig12807 - - 3e+0 At3g14595 unknown protein C.G. S.X.
0.03 4e+0 34 Populus trichocarpa PtpAffx.222149.1.S1_at pmrna39390 hypothetical protein - 2e+1 At4g27657 unknown protein C.G. S.X.
0.33 5e-91 335 Triticum aestivum TaAffx.87119.1.S1_at BF482631 - - 6e+0 At5g58110 ATPase activator/ chaperone binding C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622716_at CF201892.1 - - 1e+1 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.20 6e-15 81 Zea mays Zm.13631.1.A1_at AY107385.1 src2-like protein - 1e+0 At4g01670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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