CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0928100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 83.8 Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein S.X. H.G.
0.77 93.1 Os03g0355600 AK068938.1 - Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B 0 At4g23460 beta-adaptin, putative S.X. H.G.
0.70 88.4 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative S.X. H.G.
0.64 83.4 Os08g0248900 AK073613.1 - ADP-ribosylation factor 3 2e-46 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) S.X. H.G.
0.61 81.2 Os06g0618600 AK060212.1 - Conserved hypothetical protein 8e-8 At1g50120 - S.X. H.G.
0.61 81.2 Os03g0265700 AK068453.1 - SH3 domain containing protein 6e-50 At2g07360 SH3 domain-containing protein S.X. H.G.
0.55 73.7 Os02g0537900 AK070310.1 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative S.X. H.G.
0.54 71.9 Os02g0690700 AU030655 - Clathrin adaptor complex, medium chain familyprotein 3e+0 At1g19770 ATPUP14 S.X. H.G.
0.52 69.6 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein S.X. H.G.
0.50 68.0 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.0 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.8 96.5 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.8 96.5 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
4.4 96.2 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
4.1 96.0 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
4.1 96.0 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
3.8 95.7 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.8 95.7 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
3.8 95.7 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
3.7 95.6 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-6 56 Os03g0217000 AK120090.1 - Inhibin beta B chain precursor (Activin beta-Bchain) 5e+0 At5g09230 SRT2 (SIRTUIN 2) C.G. S.X.
0.02 2e-6 56 Os05g0579300 AK111350.1 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 4e-2 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) C.G. S.X.
0.02 2e-6 56 Os11g0629400 AK099444.1 - Nitrilase associated protein-like 2e-2 At1g26355 SP1L1 (SPIRAL1-LIKE1) C.G. S.X.
0.02 9e-6 54 Os12g0561900 AK121202.1 - Conserved hypothetical protein 9e-1 At1g02813 unknown protein C.G. S.X.
0.01 2e-6 56 Os01g0242900 AK071658.1 - Conserved hypothetical protein 9e-5 At1g17080 unknown protein C.G. S.X.
0.01 9e-6 54 Os10g0489200 AK058561.1 - DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotidesynthase [ATP]) 9e-2 At2g32840 proline-rich family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-12 73 Arabidopsis thaliana At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV - - - C.G. S.X.
0.08 6e-3 44 Glycine max GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein C.G. S.X.
0.22 4e-116 418 Hordeum vulgare Contig14969_at Contig14969 - - 9e-2 At3g48860 unknown protein C.G. S.X.
0.08 4e-10 67 Populus trichocarpa PtpAffx.16082.2.S1_a_at CV232704 hypothetical protein - 2e-11 At5g13260 unknown protein C.G. S.X.
0.50 4e-164 579 Triticum aestivum Ta.9619.1.S1_a_at CD908424 - - 8e-10 At3g48860 unknown protein C.G. S.X.
0.05 6e-6 52 Vitis vinifera 1617837_at CB972171 hypothetical protein LOC100260846 - 1e-12 At5g13260 unknown protein C.G. S.X.
0.02 8e-3 42 Zea mays Zm.16508.3.A1_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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