CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0911200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0911200 AK101333.1 - Ribophorin II family protein 1e-6 At4g21150 HAP6 (HAPLESS 6) S.X. H.G.
0.67 87.2 Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic S.X. H.G.
0.67 87.2 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative S.X. H.G.
0.67 87.2 Os02g0537900 AK070310.1 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative S.X. H.G.
0.61 81.2 Os03g0694900 AK121157.1 - Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNAligase) (ValRS) 2e-28 At1g14610 TWN2 (TWIN 2) S.X. H.G.
0.59 78.0 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.3 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
4.3 96.1 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
3.4 95.2 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.3 95.1 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
3.3 95.1 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.2 94.9 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.2 94.9 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-3 44 Os03g0798200 AK071454.1 - Zn-finger, RING domain containing protein 4e-9 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) C.G. S.X.
0.01 3e-2 42 Os12g0580400 AK099986.1 - Amino acid/polyamine transporter I family protein 1e+0 At5g47080 CKB1 C.G. S.X.
0.01 1e-1 40 Os07g0414400 9635.m02202 - - 2e+0 At3g06420 ATG8H (autophagy 8h) C.G. S.X.
0.01 1e-1 40 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative C.G. S.X.
0.01 1e-1 40 Os11g0171500 AY144497.1 - Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK) 1e-9 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) C.G. S.X.
0.01 1e-1 40 Os12g0149300 AK110842.1 - Xyloglucan 6-xylosyltransferase (EC 2.4.2.39)(AtXT1) 3e-3 At5g07720 galactosyl transferase GMA12/MNN10 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-6 56 Arabidopsis thaliana At4g21150 827863 HAP6 (HAPLESS 6) F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid terminal N-glycosylation, response to cold;C:in 6 components;MFPO - - - C.G. S.X.
0.06 1e-1 40 Glycine max Gma.2229.1.S1_at CD407103 - - 4e-5 At4g21150 HAP6 (HAPLESS 6) C.G. S.X.
0.27 4e-107 389 Hordeum vulgare Contig11902_at Contig11902 - - 2e+0 At5g56750 Ndr family protein C.G. S.X.
0.02 7e-3 44 Populus trichocarpa PtpAffx.129645.1.S1_at CA932058 hypothetical protein - 1e-13 At4g21150 HAP6 (HAPLESS 6) C.G. S.X.
0.28 2e-98 361 Triticum aestivum Ta.1309.3.S1_at CA598538 - - 8e+0 At4g19680 IRT2 C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1617788_at CF207517 hypothetical protein LOC100243898 - 2e-2 At4g18000 unknown protein C.G. S.X.
0.64 0 843 Zea mays Zm.3236.1.S1_at BG837635 hypothetical protein LOC100279928 - 3e-1 At5g03350 legume lectin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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