CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0908700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related S.X. H.G.
0.83 95.8 Os01g0261200 AB028187.1 - No apical meristem (NAM) protein domain containingprotein 7e-5 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) S.X. H.G.
0.67 87.2 Os04g0584600 AB042550.1 - Calcium dependent protein kinase 3e-44 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.67 87.2 Os01g0672400 AK064817.1 - Drought induced 19 family protein 3e-1 At4g32090 galactosyltransferase S.X. H.G.
0.47 62.3 Os05g0473500 AK101630.1 - Exo70 exocyst complex subunit family protein 5e+0 At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.47 62.3 Os01g0748900 AK071946.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 3e-4 At1g29690 CAD1 (constitutively activated cell death 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 98.8 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
15.1 98.6 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
13.4 98.5 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
12.2 98.3 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
9.1 97.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.7 97.8 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.4 97.5 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.2 97.4 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.2 97.4 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-16 89 Os06g0608800 AK099238.1 - Copine domain containing protein 3e-16 At3g01650 RGLG1 (RING domain Ligase1) C.G. S.X.
0.11 2e-9 65 Os08g0494300 AK066150.1 - Copine domain containing protein 1e-20 At1g67800 copine-related C.G. S.X.
0.09 8e-6 54 Os01g0960500 AK065423.1 - Copine domain containing protein 1e-12 At5g63970 copine-related C.G. S.X.
0.02 5e-4 48 Os01g0878000 AK104289.1 - Conserved hypothetical protein 5e-1 At1g09812 unknown protein C.G. S.X.
0.02 3e-2 42 Os05g0553400 AK108452.1 - Myb-related transcription factor-like protein (MYBtranscription factor) 3e-6 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-17 91 Arabidopsis thaliana At1g67800 843106 copine-related F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF - - - C.G. S.X.
0.23 5e-22 107 Glycine max Gma.4028.1.S1_a_at BU546487 - - 2e-32 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.51 0 1061 Hordeum vulgare Contig7538_at Contig7538 - - 8e-11 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.19 1e-22 109 Populus trichocarpa PtpAffx.22608.1.A1_at DN485232 hypothetical protein - 7e-32 At1g67800 copine-related C.G. S.X.
0.47 0 922 Triticum aestivum Ta.23247.1.S1_x_at CK163981 - - 1e-12 At1g67800 copine-related C.G. S.X.
0.09 2e-14 79 Vitis vinifera 1617199_at CB003856 - - 1e-23 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.39 4e-177 621 Zea mays Zm.5022.1.S1_at BM074052 hypothetical protein LOC100279516 - 1e-17 At1g67800 copine-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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