CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0899800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.7 Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) S.X. H.G.
0.64 83.4 Os02g0517150 9630.m02996 - - 7e-8 At3g11420 fringe-related protein S.X. H.G.
0.60 79.7 Os02g0245600 9630.m01383 - - 3e-1 At5g60680 unknown protein S.X. H.G.
0.58 77.0 Os07g0522100 9635.m03329 - - 8e-2 At1g12665 - S.X. H.G.
0.51 68.7 Os02g0748400 9630.m05045 - - 3e+0 At1g63930 unknown protein S.X. H.G.
0.51 68.7 Os12g0214600 9640.m01065 - - 5e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.50 68.0 Os12g0594100 9640.m03935 - - 6e-2 At5g11930 glutaredoxin family protein S.X. H.G.
0.46 60.9 Os07g0177900 9635.m00757 - - 3e+0 At1g04000 unknown protein S.X. H.G.
0.45 58.8 Os10g0538001 9638.m03547 - - 8e-1 At3g03020 unknown protein S.X. H.G.
0.45 58.8 Os10g0435700 9638.m02560 - - 3e+0 At4g11870 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
77.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
59.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
38.8 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.3 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.3 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-127 458 Os02g0614300 AK112070.1 - ANT (Ovule development protein aintegumenta) 5e-20 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.26 1e-66 256 Os11g0295900 9639.m01770 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-5 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.18 4e-54 214 Os07g0124700 AK109848.1 - ANT (Ovule development protein aintegumenta) 3e-6 At1g72570 DNA binding / transcription factor C.G. S.X.
0.15 7e-65 250 Os06g0657500 AK101959.1 - ANT (Ovule development protein aintegumenta) 3e-10 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 6e-30 133 Arabidopsis thaliana At1g51190 841542 PLT2 (PLETHORA 2) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. - - - C.G. S.X.
0.23 1e-25 119 Glycine max GmaAffx.91601.1.S1_s_at CF807326 - - 1e-47 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
0.03 2e-3 44 Hordeum vulgare Contig8984_at Contig8984 - - 2e+0 At2g05520 GRP-3 (GLYCINE-RICH PROTEIN 3) C.G. S.X.
0.30 8e-61 236 Populus trichocarpa PtpAffx.209236.1.S1_x_at pmrna18264 AP2 domain-containing transcription factor - 2e-17 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.08 1e-9 65 Triticum aestivum TaAffx.64176.1.S1_at BJ312281 - - 8e-11 At1g72570 DNA binding / transcription factor C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1616828_s_at CD799685 similar to Os03g0670700 - 1e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.18 2e-62 240 Zea mays Zm.123.1.S1_at AY109146.1 heat shock complementing factor1 - 2e-5 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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