CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0889101

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0889101 NM_190210.1 - - 1e-3 At3g17160 unknown protein S.X. H.G.
0.91 98.9 Os10g0153800 NM_194912.1 - - 2e-1 At2g02440 unknown protein S.X. H.G.
0.73 91.1 Os06g0148100 9634.m00477 - - 1e+0 At4g33660 unknown protein S.X. H.G.
0.67 87.2 Os02g0207100 AK119766.1 - BCH1 1e+0 At2g11005 glycine-rich protein S.X. H.G.
0.67 87.2 Os11g0643200 9639.m03905 - - 1e+1 At5g54000 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.40 51.1 Os11g0215200 9639.m01036 - - 5e-2 At4g19270 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.4 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.2 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.5 99.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.2 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.0 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 3e-26 121 Os07g0600900 9635.m04093 - - 2e+0 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) C.G. S.X.
0.22 0 650 Os01g0889200 AK062351.1 - RNA polymerase III RPC4 family protein 4e-1 At3g60080 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 9e-6 54 Os11g0442900 AK110914.1 - Zn-finger, C2H2 type domain containing protein 5e-2 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.03 2e-5 52 Os03g0764100 AF332876.1 - Conserved hypothetical protein 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.02 1e-6 56 Os02g0189300 AK060691.1 - Lipolytic enzyme, G-D-S-L family protein 4e-5 At2g42990 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 8e-5 50 Os04g0549700 AK107119.1 - Dehydration responsive element binding protein 2F(DREB2F protein) 2e-16 At2g25820 transcription factor C.G. S.X.
0.02 8e-5 50 Os05g0379300 AK109293.1 - Hypothetical protein 4e-2 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At5g28490 832941 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. - - - C.G. S.X.
0.03 1e-3 46 Glycine max GmaAffx.55766.1.S1_x_at BQ079492 - - 8e-1 At3g48420 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig18088_at Contig18088 - - 6e+0 At5g04760 myb family transcription factor C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.215065.1.S1_at pmrna29024 hypothetical protein - 2e-1 At5g44565 unknown protein C.G. S.X.
0.03 3e-3 44 Triticum aestivum TaAffx.12160.1.A1_at BJ286243 - - 8e-1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.04 2e-1 36 Vitis vinifera 1611338_at CB836214 - - 4e+0 At1g74990 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 5e-6 52 Zea mays Zm.2807.1.A1_at BM334793 zinc-finger protein 1 - 7e-1 At5g57345 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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