Gene omics information

Query gene ID	Os01g0888900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	68.0	Os01g0888900	AK120651.1	-	Hypothetical protein	2e-2	At4g15120	VQ motif-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os01g0915000	AK107951.1	-	Uncharacterized plant-specific protein DUF506domain containing protein	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os05g0454500	AK121844.1	-	Hypothetical protein	1e-1	At5g59080	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0549000	AK060276.1	-	Myb, DNA-binding domain containing protein	2e+0	At4g00200	DNA binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0823900	AK065307.1	-	U box domain containing protein	1e+0	At4g32030	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os04g0679400	AK121152.1	-	Conserved hypothetical protein	5e-2	At5g37550	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.0	99.6	GSM154937	Root_tZ-treatment_30min_replicate 2	GSE6719	Cytokinin responsive genes in rice
27.0	99.6	GSM154833	Root_tZ-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
25.0	99.5	GSM154942	Root_tZ-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice
22.8	99.3	GSM154944	Root_tZ-treatment_120min_replicate 3	GSE6719	Cytokinin responsive genes in rice
22.6	99.3	GSM154938	Root_tZ-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
18.7	99.0	GSM154943	Root_tZ-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
12.1	98.3	GSM431926	Root- +Fe+P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.6	98.2	GSM431925	Root- +Fe+P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.9	97.3	GSM431930	Root- +Fe-P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.3	97.2	GSM431929	Root- +Fe-P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-4	46	Os12g0162500	AK065995.1	-	BZIP-like protein	4e-2	At4g38900	bZIP protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-3	44	Os05g0456900	AK073249.1	-	Hypothetical protein	2e+0	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	42	Os08g0290000	AK101041.1	-	TPR-like domain containing protein	2e-4	At1g72080	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At4g15120	827178	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.38046.1.S1_at	BU760708	-	-	4e+0	At1g67785	unknown protein	C.G.	S.X.	Please select
0.25	2e-16	85	Hordeum vulgare	Contig15351_at	Contig15351	-	-	1e+0	At5g11680	unknown protein	C.G.	S.X.	Please select
0.06	1e-1	38	Populus trichocarpa	PtpAffx.205442.1.S1_x_at	pmrna10761	hypothetical protein	-	6e-3	At3g42310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	1e-12	73	Triticum aestivum	Ta.12896.1.S1_at	BE446391	-	-	4e+0	At4g25050	ACP4 (acyl carrier protein 4)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.05	8e-3	40	Zea mays	Zm.13877.1.S1_x_at	AF099426.1	R2R3MYB-domain protein	-	2e-1	At5g52260	AtMYB19 (myb domain protein 19)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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