CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0876800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 93.4 Os01g0876800 BI804947 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g28770 BZO2H3 S.X. H.G.
0.71 89.6 Os07g0109400 AK070584.1 - Conserved hypothetical protein 5e-1 At1g55530 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.58 77.0 Os03g0266800 AK100780.1 - Protein kinase domain containing protein 7e-27 At1g31420 FEI1 (FEI 1) S.X. H.G.
0.54 71.9 Os03g0833800 AK066209.1 - Glycoside hydrolase, family 28 protein 1e-3 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.51 68.7 Os01g0195200 AK105501.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 3e-10 At2g20300 ALE2 (Abnormal Leaf Shape 2) S.X. H.G.
0.51 68.7 Os03g0328000 AK059469.1 - Adapter protein SPIKE1 2e-44 At4g16340 SPK1 (SPIKE1) S.X. H.G.
0.48 63.7 Os03g0143800 BQ908516 - Cytoplasmic fragile X mental retardation proteininteracting protein family protein 6e+0 At5g46010 homeobox-leucine zipper transcription factor family protein S.X. H.G.
0.47 62.3 Os10g0371000 AK119798.1 - Pollen Ole e 1 allergen and extensin domaincontaining protein 2e+0 At5g53190 nodulin MtN3 family protein S.X. H.G.
0.46 60.9 Os12g0640900 AK066694.1 - Myosin II heavy chain-like family protein 4e-50 At1g24764 ATMAP70-2 (microtubule-associated proteins 70-2) S.X. H.G.
0.45 58.8 Os01g0969100 AK070623.1 - Conserved hypothetical protein 9e-75 At1g08200 AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 98.8 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
14.0 98.5 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.9 98.4 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
12.6 98.4 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.5 98.3 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
10.8 98.1 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.6 98.1 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.5 97.7 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.3 97.7 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-6 56 Os03g0245900 9631.m01359 - - 2e-4 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.10 3e-25 117 Os01g0958500 AK072960.1 - RNA binding protein-like 1e-6 At1g78260 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.06 1e-3 46 Os06g0622900 AK065654.1 - RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 2 4e-3 At1g78260 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 4e-6 54 Os02g0714000 AK067428.1 - RGP-3 (Fragment) 3e-1 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 2e+0 34 Os06g0674700 9634.m04492 - - 4e+0 At4g38580 ATFP6 (FARNESYLATED PROTEIN 6) C.G. S.X.
0.03 6e-2 40 Os03g0286500 AK060649.1 - RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 2 8e-10 At3g54770 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 2e+0 34 Os01g0385200 9629.m02766 - - 2e-2 At3g49307 Expressed protein C.G. S.X.
0.02 2e+0 34 Os02g0465500 AK070377.1 - Exonuclease domain containing protein 1e-5 At2g26970 exonuclease family protein C.G. S.X.
0.02 2e+0 34 Os08g0447900 AK071446.1 - Adenylyl cyclase associated protein 2e-10 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) C.G. S.X.
0.01 6e-2 40 Os11g0637700 AK071789.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 8e-11 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At5g28770 832990 BZO2H3 bZIP protein BZO2H3 mRNA, partial cds - - - C.G. S.X.
0.04 1e+0 34 Glycine max PsAffx.psZS014xM06f_at PsAffx.psZS014xM06f - - 2e+0 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
0.32 2e-37 155 Hordeum vulgare Contig7402_at Contig7402 - - 3e+0 At1g68480 JAG (JAGGED) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.217957.1.S1_at pmrna33433 hypothetical protein - 3e-1 At5g50430 UBC33 (ubiquitin-conjugating enzyme 33) C.G. S.X.
0.20 3e-40 165 Triticum aestivum Ta.9075.1.S1_at BQ170302 - - 6e-15 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.05 9e-1 32 Vitis vinifera 1618310_s_at CF210664 hypothetical protein LOC100259803 - 1e-1 At3g01970 WRKY45 C.G. S.X.
0.17 3e-29 127 Zea mays Zm.1141.2.A1_at BM351386 hypothetical protein LOC100276557 - 9e-14 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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