CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0859600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os01g0859600 AK072151.1 - Cyclin-like F-box domain containing protein 2e-5 At1g67190 F-box family protein S.X. H.G.
0.43 55.4 Os06g0308800 AK066935.1 - Protein of unknown function DUF605 family protein 2e-20 At4g26750 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.33 38.8 Os01g0674500 AK070401.1 - The start codon is not identified. 5e-11 At1g53320 AtTLP7 (TUBBY LIKE PROTEIN 7) S.X. H.G.
0.29 31.1 Os01g0616100 AK105714.1 - Protein kinase domain containing protein 1e-7 At1g22870 protein kinase family protein S.X. H.G.
0.08 4.2 Os07g0592200 AK099740.1 - Peptidase A1, pepsin family protein 2e-11 At5g43100 aspartyl protease family protein S.X. H.G.
0.06 3.0 Os10g0546300 AK103033.1 - Conserved hypothetical protein 1e-13 At2g27900 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.0 96.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.8 95.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
3.1 94.8 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.1 94.8 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.9 94.5 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
2.8 94.3 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.8 94.3 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
2.7 94.1 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.6 93.8 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os04g0479100 AK071348.1 - Conserved hypothetical protein 1e+0 At3g55646 unknown protein C.G. S.X.
0.01 2e-1 40 Os05g0224600 9633.m01193 - - 8e-1 At2g25670 unknown protein C.G. S.X.
0.01 6e-1 38 Os01g0931200 AK063586.1 - ARM repeat fold domain containing protein 2e-1 At5g55850 NOI C.G. S.X.
0.01 6e-1 38 Os02g0246500 9630.m01387 - - 9e-1 At3g56400 WRKY70 C.G. S.X.
0.01 6e-1 38 Os07g0264100 AK065209.1 - D-isomer specific 2-hydroxyacid dehydrogenase,NAD-binding domain containing protein 1e+1 At5g44572 unknown protein C.G. S.X.
0.01 6e-1 38 Os09g0420900 AK065475.1 - NPH3 domain containing protein 2e-5 At2g23050 NPY4 (NAKED PINS IN YUC MUTANTS 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-5 52 Arabidopsis thaliana At1g67190 843039 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO - - - C.G. S.X.
0.07 1e-4 50 Glycine max GmaAffx.2976.1.S1_at BQ740557 - - 6e-18 At1g67190 F-box family protein C.G. S.X.
0.14 4e-82 305 Hordeum vulgare Contig19555_at Contig19555 - - 4e-1 At1g67190 F-box family protein C.G. S.X.
0.11 7e-6 54 Populus trichocarpa PtpAffx.222478.1.S1_at pmrna39929 hypothetical protein - 1e-48 At1g67190 F-box family protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.58044.1.S1_at CA622873 - - 7e-8 At5g10780 - C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1622865_at CB981125 - - 2e-2 At1g80090 CBS domain-containing protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.9567.1.S1_at BM378205 - - 5e-10 At5g10780 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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