CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0852200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 96.0 Os01g0852200 AK063954.1 - Major facilitator superfamily protein 5e-9 At3g46980 transporter-related S.X. H.G.
0.56 76.3 Os06g0142900 CB641902 - Conserved hypothetical protein 2e+0 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.36 44.0 Os02g0566900 AK068953.1 - Conserved hypothetical protein 2e-6 At1g36980 unknown protein S.X. H.G.
0.36 44.0 Os06g0320100 AK067233.1 - - 7e-2 At4g28790 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.34 40.0 Os05g0533900 AK106477.1 - - 3e-3 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative S.X. H.G.
0.30 32.7 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.28 31.1 Os01g0280000 AK103348.1 - Exonuclease domain containing protein 4e+0 At2g34700 pollen Ole e 1 allergen and extensin family protein S.X. H.G.
0.26 25.6 Os10g0495000 AK066573.1 - KH, type 1 domain containing protein 2e-2 At5g15270 KH domain-containing protein S.X. H.G.
0.26 25.6 Os07g0618600 AK121137.1 - Zn-finger, FYVE type domain containing protein 3e+0 At2g26210 ankyrin repeat family protein S.X. H.G.
0.25 24.1 Os07g0103200 AU166434 - Conserved hypothetical protein 8e-10 At4g27120 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 97.7 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.8 97.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
5.6 96.9 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
5.2 96.7 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
5.2 96.7 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
5.0 96.6 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.9 96.5 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.9 96.5 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
4.6 96.3 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.6 96.3 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-10 67 Os05g0451100 AK120548.1 - General substrate transporter family protein 1e-6 At2g38060 PHT4 C.G. S.X.
0.02 9e-6 54 Os12g0473400 9640.m02775 - - 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) C.G. S.X.
0.01 2e-4 50 Os03g0313600 AK067474.1 - Adenylosuccinate-AMP lyase (EC 4.3.2.2) 2e-14 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.01 2e-3 46 Os08g0190300 9636.m00866 - Disease resistance protein family protein 3e-2 At3g24860 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 9e-3 44 Os06g0672400 AK068794.1 - Ribulose bisphosphate carboxylase, large chainfamily protein 1e-8 At1g07090 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) C.G. S.X.
0.01 9e-3 44 Os08g0528500 AK111028.1 - Protein of unknown function UPF0016 family protein 3e-2 At5g36290 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-9 63 Arabidopsis thaliana At3g46980 823851 transporter-related Encodes an inorganic phosphate transporter (PHT4;3). - - - C.G. S.X.
0.14 2e-18 95 Glycine max GmaAffx.52282.1.S1_at BU577440 - - 4e-23 At3g46980 transporter-related C.G. S.X.
0.41 0 944 Hordeum vulgare Contig17164_at Contig17164 - - 7e-1 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.20 4e-32 141 Populus trichocarpa PtpAffx.200753.1.S1_at pmrna1454 hypothetical protein - 3e-49 At3g46980 transporter-related C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.7714.1.S1_at CA652347 - - 1e+0 At3g13780 - C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1621554_s_at CF511998 similar to Os03g0670700 - 4e-6 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.01 5e-1 36 Zea mays Zm.9917.1.A1_at BM331863 ribosomal protein L32 containing protein - 1e+0 At1g69485 structural constituent of ribosome C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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