CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0848200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os01g0848200 CB633945 - Delta 1-pyrroline-5-carboxylate synthetase (P5CS)[Includes: Glutamate 5-kinase (EC 2.7.2.11)(Gamma-glutamyl kinase) (GK) 4e+0 At5g60805 - S.X. H.G.
0.55 73.7 Os01g0970900 AK101688.1 - TPR-like domain containing protein 5e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) S.X. H.G.
0.43 55.4 Os03g0746500 AK058367.1 - RNA helicase like protein 5e-6 At4g14790 ATSUV3 S.X. H.G.
0.36 44.0 Os08g0135300 AK059320.1 - Hypothetical protein 2e+0 At2g16960 importin beta-2 subunit family protein S.X. H.G.
0.34 40.0 Os05g0171300 AK103471.1 - Brittle-1 protein, chloroplast precursor 4e-6 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
0.33 38.8 Os05g0386000 AK121888.1 - Conserved hypothetical protein 1e-13 At5g25265 unknown protein S.X. H.G.
0.31 34.5 Os03g0801800 AK067130.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e-6 At2g21440 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.28 31.1 Os11g0522000 9639.m02907 - XY4 protein (Fragment) 2e-1 At1g12850 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
0.26 25.6 Os03g0281800 AK067596.1 - Sulfated surface glycoprotein 185 precursor (SSG185) 1e+0 At5g56840 DNA-binding family protein S.X. H.G.
0.24 22.4 Os04g0670400 AK064003.1 - Ovarian tumour, otubain domain containing protein 4e-3 At5g67170 SEC-C motif-containing protein / OTU-like cysteine protease family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.7 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-116 422 Os05g0455500 D49714.1 - Delta 1-pyrroline-5-carboxylate synthetase (P5CS)[Includes: Glutamate 5-kinase (EC 2.7.2.11)(Gamma-glutamyl kinase) (GK) 1e-10 At3g55610 P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2) C.G. S.X.
0.20 7e-59 228 Os02g0437300 AK106928.1 - Hypothetical protein 4e-1 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.19 0 1346 Os01g0848300 AK120668.1 - TPR-like domain containing protein 2e-6 At1g71420 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.14 6e-13 75 Os02g0221200 9630.m01168 - - 2e+0 At5g53260 seed maturation family protein C.G. S.X.
0.13 3e-80 301 Os10g0420900 AK066224.1 - Hypothetical protein 5e-1 At3g54910 - C.G. S.X.
0.08 2e-41 173 Os02g0687900 AK064814.1 - Peptidase S10, serine carboxypeptidase familyprotein 4e-6 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.05 7e-44 180 Os08g0235600 9636.m01365 - Disease resistance protein family protein 6e-3 At2g05420 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.04 6e-13 75 Os04g0589132 9632.m04849 - - 4e-1 At3g23650 protein kinase-related C.G. S.X.
0.03 3e-21 105 Os01g0269500 AK103817.1 - Disease resistance protein family protein 4e-1 At1g34140 PAB1 (POLY(A) BINDING PROTEIN 1) C.G. S.X.
0.01 6e-2 42 Os09g0334500 AK065265.1 - - 9e-4 At4g39410 WRKY13 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At5g60805 3771543 - Encodes a defensin-like (DEFL) family protein. - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.42349.2.S1_at BG653753 - - 4e+0 At5g48280 unknown protein C.G. S.X.
0.04 8e+0 30 Hordeum vulgare HV_CEa0008K08r2_s_at HV_CEa0008K08r2 - - 2e+0 At5g45700 NLI interacting factor (NIF) family protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.24777.1.A1_at CV246221 - - 1e-2 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.18430.1.S1_at CA636483 - - 2e+0 At2g45170 AtATG8e C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1621963_x_at CF202638.1 - - 4e+0 At1g67920 unknown protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.9871.1.A1_at BM347991 - - 2e+0 At1g72690 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006561 The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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