CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0840900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein S.X. H.G.
0.60 79.7 Os08g0158800 AK107200.1 - Hypothetical protein 2e-1 At1g44191 - S.X. H.G.
0.40 51.1 Os08g0455700 9636.m03564 - Exo70 exocyst complex subunit family protein 1e-2 At5g50380 ATEXO70F1 (exocyst subunit EXO70 family protein F1) S.X. H.G.
0.35 41.7 Os02g0202800 AK102082.1 - FAR1 domain containing protein 8e-2 At4g35040 bZIP transcription factor family protein S.X. H.G.
0.25 24.1 Os03g0850300 9631.m06265 - Sterile alpha motif homology 2 domain containingprotein 4e-1 At1g05420 OFP12 (OVATE FAMILY PROTEIN 12) S.X. H.G.
0.17 12.6 Os02g0235000 9630.m01296 - ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein 2e+0 At1g60430 ARPC3 (actin-related protein C3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.0 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.4 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.7 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.7 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-104 381 Os01g0840800 AU058065 - Hypothetical protein 2e+0 At4g11950 unknown protein C.G. S.X.
0.26 6e-160 565 Os10g0534900 AK068029.1 - Homothorax protein (Fragment) 8e-2 At2g23760 BLH4 (BEL1-LIKE HOMEODOMAIN 4) C.G. S.X.
0.07 6e-9 63 Os01g0739850 9629.m05232 - - 6e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) C.G. S.X.
0.04 1e-13 79 Os03g0124100 AK107007.1 - Protein of unknown function DUF604 family protein 4e-6 At1g07850 transferase, transferring glycosyl groups C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At1g71090 843449 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOBA - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.84246.1.S1_at BG041039 - - 3e-1 At5g11550 binding C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig4863_at Contig4863 - - 3e-1 At1g28375 unknown protein C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.32118.1.S1_at CA600585 - - 1e-28 At4g32890 zinc finger (GATA type) family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1611684_at CD711387 hypothetical protein LOC100264749 - 2e-3 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e-1 36 Zea mays ZmAffx.968.1.S1_at AI833843 - - 2e+0 At5g67110 ALC (ALCATRAZ) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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