CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0815700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0815700 AK073519.1 - Zn-finger, Ran-binding domain containing protein 5e-10 At5g17790 VAR3 (VARIEGATED 3) S.X. H.G.
0.71 89.6 Os07g0583200 AK071674.1 - Mitochodrial transcription terminationfactor-related family protein 4e-3 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein S.X. H.G.
0.63 82.7 Os05g0571100 AK068658.1 - Plant specific of unknown function DUF860 familyprotein 4e-3 At4g01037 ubiquitin thiolesterase S.X. H.G.
0.53 71.3 Os10g0198600 AK068249.1 - Intron-encoded nuclease 2 domain containingprotein 2e-2 At1g53800 endonuclease S.X. H.G.
0.52 69.6 Os03g0108600 AK065776.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 2e-5 At3g06980 DEAD/DEAH box helicase, putative S.X. H.G.
0.50 68.0 Os01g0757700 CF312018 - TPR-like domain containing protein 2e-3 At4g21190 emb1417 (embryo defective 1417) S.X. H.G.
0.42 53.9 Os03g0219700 AK071610.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 3e-4 At1g12770 EMB1586 (embryo defective 1586) S.X. H.G.
0.40 51.1 Os02g0602400 AK069111.1 - Mitochodrial transcription terminationfactor-related family protein 2e-1 At2g16980 tetracycline transporter S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.4 98.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
6.4 97.2 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
6.3 97.2 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.0 97.0 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.7 96.9 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.0 96.6 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.9 96.5 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.9 96.5 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os06g0316100 AK105260.1 - Hypothetical protein 2e-1 At2g02061 unknown protein C.G. S.X.
0.01 2e-1 40 Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic C.G. S.X.
0.01 2e-1 40 Os10g0544550 NM_197605.1 - - 2e-4 At4g35140 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 8e-1 38 Os05g0407200 AK072186.1 - WD40-like domain containing protein 8e-20 At4g03020 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 8e-1 38 Os12g0597500 AK101904.1 - Conserved hypothetical protein 5e-24 At5g43600 UAH (UREIDOGLYCOLATE AMIDOHYDROLASE) C.G. S.X.
0.01 3e+0 36 Os04g0595800 AK058642.1 - Secretory carrier membrane protein 2e-16 At1g32050 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.01 3e+0 36 Os07g0602900 9635.m04117 - Conserved hypothetical protein 5e-1 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) C.G. S.X.
0.01 3e+0 36 Os10g0368650 9638.m01886 - - 3e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.01 3e+0 36 Os10g0443500 9638.m02638 - - 4e-3 At2g23310 ATRER1C1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-10 67 Arabidopsis thaliana At5g17790 831647 VAR3 (VARIEGATED 3) Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. - - - C.G. S.X.
0.07 1e-5 54 Glycine max GmaAffx.69683.1.S1_at CA799656 - - 7e-9 At5g17790 VAR3 (VARIEGATED 3) C.G. S.X.
0.01 8e-1 36 Hordeum vulgare Contig10162_s_at Contig10162 - - 4e-1 At1g74730 unknown protein C.G. S.X.
0.04 2e-10 69 Populus trichocarpa Ptp.1746.1.A1_at CV236183 hypothetical protein - 2e+0 At5g17790 VAR3 (VARIEGATED 3) C.G. S.X.
0.03 2e-3 46 Triticum aestivum TaAffx.51594.1.S1_at CA723204 - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.04 4e-17 89 Vitis vinifera 1617399_at CB342525 hypothetical protein LOC100262132 - 5e-21 At5g17790 VAR3 (VARIEGATED 3) C.G. S.X.
0.01 2e-1 38 Zea mays Zm.15667.1.A1_at CD437700 - - 1e+0 At5g43280 ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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