CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0810100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os01g0810100 AK071916.1 - Ribonuclease III domain containing protein 3e-22 At4g37510 ribonuclease III family protein S.X. H.G.
0.43 55.4 Os02g0730800 AK066980.1 - - 1e-8 At3g20930 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.40 51.1 Os10g0111300 CB638003 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e-3 At1g69860 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
0.33 38.8 Os03g0769600 AK100054.1 - ResB-like family protein 7e-5 At1g49380 cytochrome c biogenesis protein family S.X. H.G.
0.25 24.1 Os02g0726600 AK064213.1 - Conserved hypothetical protein 5e+0 At5g67060 HEC1 (HECATE 1) S.X. H.G.
0.22 19.4 Os07g0548300 NM_185739.1 - CRP1 4e-6 At5g42310 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.8 98.7 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.9 98.6 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.8 98.5 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.5 98.3 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.6 98.2 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.3 98.2 GSM421677 XOC, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.5 98.1 GSM421697 XOO, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.0 98.0 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.8 98.0 GSM421676 XOC, 8 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.1 97.9 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 3011 Os01g0810000 AK120752.1 - Utp11 family protein 2e-1 At3g60360 EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) C.G. S.X.
0.02 1e-4 50 Os10g0431700 9638.m02532 - - 2e+0 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) C.G. S.X.
0.02 5e-4 48 Os03g0180600 AK101997.1 - Conserved hypothetical protein 6e-1 At4g35840 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 5e-4 48 Os06g0170600 9640.m02691 - BED finger domain containing protein 1e-1 At5g22570 WRKY38 C.G. S.X.
0.01 5e-4 48 Os01g0240600 NM_188710.1 - - 7e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-22 107 Arabidopsis thaliana At4g37510 829906 ribonuclease III family protein F:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFP - - - C.G. S.X.
0.12 3e-11 71 Glycine max Gma.1367.1.S1_at BQ297577 - - 2e-19 At4g37510 ribonuclease III family protein C.G. S.X.
0.30 1e-121 436 Hordeum vulgare Contig21442_at Contig21442 - - 4e-13 At4g37510 ribonuclease III family protein C.G. S.X.
0.09 3e-8 61 Populus trichocarpa PtpAffx.203053.1.S1_at pmrna6046 hypothetical protein - 6e-45 At4g37510 ribonuclease III family protein C.G. S.X.
0.19 6e-64 246 Triticum aestivum TaAffx.65198.1.S1_at BJ257189 - - 2e+0 At5g19490 DNA binding / sequence-specific DNA binding C.G. S.X.
0.29 5e-40 165 Vitis vinifera 1615191_at BQ794962 hypothetical protein LOC100254381 - 5e-32 At4g37510 ribonuclease III family protein C.G. S.X.
0.13 3e-48 192 Zea mays Zm.3504.1.A1_at BM073847 chloroplast ribonuclease III domain protein - 2e-2 At4g37510 ribonuclease III family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage