CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0791600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - S.X. H.G.
0.91 98.9 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - S.X. H.G.
0.91 98.9 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - S.X. H.G.
0.83 95.8 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - S.X. H.G.
0.77 93.1 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) S.X. H.G.
0.67 87.2 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 97.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.9 95.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.5 95.3 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
3.5 95.3 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.4 95.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.4 95.2 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
3.4 95.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3 95.1 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
3.3 95.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 0 835 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - C.G. S.X.
0.02 2e+0 34 Os04g0366800 9632.m02818 - - 1e-5 At2g41970 protein kinase, putative C.G. S.X.
0.02 7e+0 32 Os04g0572500 9632.m04686 - - 1e-1 At5g60850 OBP4 C.G. S.X.
0.01 4e-1 36 Os03g0301700 AK101878.1 - Calmodulin-binding protein phosphatase 4e-3 At1g09160 protein phosphatase 2C-related / PP2C-related C.G. S.X.
0.01 4e-1 36 Os12g0613700 AK121703.1 - Transcriptional factor B3 family protein 9e-52 At5g37020 ARF8 (AUXIN RESPONSE FACTOR 8) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 4e-129 460 Arabidopsis thaliana Atcg00490 - - large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.12435.1.S1_at BE330077 - - 9e-1 At1g66820 glycine-rich protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HZ52M24r_s_at HZ52M24r - - 4e-3 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.50 1e-52 206 Populus trichocarpa PtpAffx.211230.1.S1_x_at pmrna22056 hypothetical protein - 4e-56 Atcg00490 - C.G. S.X.
0.65 0 676 Triticum aestivum TaAffx.128414.54.S1_x_at BE217062 - - 4e-180 Atcg00490 - C.G. S.X.
0.29 3e-53 206 Vitis vinifera 1607106_s_at CD720969 similar to Os06g0598500 - 0 Atcg00490 - C.G. S.X.
0.78 1e-155 547 Zea mays ZmAffx.1092.1.S1_s_at AW066155 - - 1e-107 Atcg00490 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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