CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0780500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os01g0780500 AF225922.1 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.67 87.2 Os06g0714200 BM419528 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.60 79.7 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C S.X. H.G.
0.57 77.0 Os04g0517400 AK059571.1 - Conserved hypothetical protein 5e-15 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) S.X. H.G.
0.55 73.7 Os07g0592200 AK099740.1 - Peptidase A1, pepsin family protein 2e-11 At5g43100 aspartyl protease family protein S.X. H.G.
0.43 55.4 Os06g0188000 AK066305.1 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.9 95.8 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.9 95.8 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
3.8 95.7 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.7 95.6 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.6 95.5 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.5 95.3 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
3.5 95.3 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.4 95.2 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.3 95.1 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 4e-152 539 Os05g0503000 AK068335.1 - Secretory carrier membrane protein 2e-16 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.27 1e-19 99 Os07g0564600 AK102110.1 - Secretory carrier membrane protein 9e-13 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.08 1e-10 69 Os03g0582200 AK099288.1 - SCAMP family protein 1e-9 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.07 1e-3 46 Os02g0697800 AK106197.1 - SCAMP family protein 4e-5 At1g32050 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.03 4e-7 57 Os04g0595800 AK058642.1 - Secretory carrier membrane protein 2e-16 At1g32050 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.01 2e-2 42 Os08g0290000 AK101041.1 - TPR-like domain containing protein 2e-4 At1g72080 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-14 81 Arabidopsis thaliana At2g20840 816617 secretory carrier membrane protein (SCAMP) family protein F:transmembrane transporter activity;P:protein transport;C:plasma membrane;MPOF - - - C.G. S.X.
0.25 7e-14 79 Glycine max Gma.4485.1.S1_at BE347874 - - 8e-13 At1g61250 SC3 (SECRETORY CARRIER 3) C.G. S.X.
0.45 6e-126 450 Hordeum vulgare Contig6807_at Contig6807 - - 8e-19 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.23 1e-15 85 Populus trichocarpa PtpAffx.15659.1.S1_at CV232365 hypothetical protein - 2e-84 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.57 0 850 Triticum aestivum Ta.22715.2.A1_at CD873981 - - 3e-12 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.17 1e-15 83 Vitis vinifera 1612790_at CF608251 hypothetical protein LOC100243027 - 1e-17 At1g61250 SC3 (SECRETORY CARRIER 3) C.G. S.X.
0.43 2e-159 561 Zea mays Zm.13717.1.S1_at AY106421.1 SC3 protein - 9e-16 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage