Gene omics information

Query gene ID	Os01g0757200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.4	Os01g0757200	AK101713.1	-	Gibberellin 2-beta-dioxygenase (EC 1.14.11.13)(Gibberellin 2-beta- hydroxylase) (Gibberellin 2-oxidase)(GA 2-oxidase)	6e-5	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os04g0674000	AK119671.1	-	Conserved hypothetical protein	7e-1	At4g16240	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os04g0543500	9632.m04421	-	Homeodomain-like containing protein	2e+0	At2g44730	transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os09g0486500	AF140722.2	-	Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein)	2e+0	At5g24290	integral membrane family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.34	40.0	Os01g0667900	AK105335.1	-	Glutaredoxin domain containing protein	2e+0	At4g38140	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os02g0790500	AK066691.1	-	Glycosyl transferase, family 20 domain containingprotein	3e-11	At1g68020	ATTPS6	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	Os06g0318800	AK062356.1	-	Hypothetical protein	5e-3	At4g02235	AGL51	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	31.1	Os03g0761100	AK066083.1	-	Protein phosphatase 2C-like protein	6e-8	At4g33920	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os07g0691300	AK069499.1	-	Wound-induced WI12 family protein	4e-1	At5g17660	tRNA (guanine-N7-)-methyltransferase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os10g0392400	AK061602.1	-	ZIM domain containing protein	5e-1	At5g56320	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.6	GSM174889	H FR13 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
26.3	99.5	GSM174886	F FR13 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
15.3	98.7	GSM159208	Seed (S1, 0 - 2 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
14.8	98.6	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
10.6	98.1	GSM302921	root_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
10.4	98.1	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.9	98.0	GSM278849	WuYun3-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.9	97.8	GSM278854	KT95-418-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.4	97.7	GSM154938	Root_tZ-treatment_30min_replicate 3	GSE6719	Cytokinin responsive genes in rice
7.4	97.5	GSM278847	WuYun3-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-24	115	Os05g0514600	AK107211.1	-	2OG-Fe(II) oxygenase domain containing protein	3e+0	At5g38070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	4e-26	121	Os01g0209700	AK108802.1	-	Gibberellin 2-beta-dioxygenase (EC 1.14.11.13)(Gibberellin 2-beta- hydroxylase) (Gibberellin 2-oxidase)(GA 2-oxidase)	2e-1	Atmg01350	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	9e-21	103	Os05g0560900	AK101758.1	-	Gibberellin 2-beta-dioxygenase (EC 1.14.11.13)(Gibberellin 2-beta- hydroxylase) (Gibberellin 2-oxidase)(GA 2-oxidase)	6e-11	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-8	61	Os01g0935400	NM_190055.1	-	2OG-Fe(II) oxygenase domain containing protein	1e-1	At3g21420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-5	50	Arabidopsis thaliana	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.C188000028_at	PsAffx.C188000028	-	-	1e+1	At5g10780	-	C.G.	S.X.	Please select
0.37	0	803	Hordeum vulgare	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	C.G.	S.X.	Please select
0.04	1e+0	36	Populus trichocarpa	PtpAffx.201339.1.S1_at	pmrna2655	gibberellin 2-oxidase /// hypothetical protein	-	2e-3	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-174	613	Triticum aestivum	Ta.16799.1.S1_at	CA612909	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	C.G.	S.X.	Please select
0.09	7e-11	67	Vitis vinifera	1618503_at	BQ795575	hypothetical protein LOC100248356	-	2e-17	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	C.G.	S.X.	Please select
0.52	0	918	Zea mays	Zm.13828.1.S1_at	AY104425.1	-	-	5e-5	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
S	GO:0009685	The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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