CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0749400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 S.X. H.G.
0.91 98.9 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - S.X. H.G.
0.83 95.8 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - S.X. H.G.
0.73 91.1 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - S.X. H.G.
0.67 87.2 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) S.X. H.G.
0.60 79.7 Os01g0338600 AK066580.1 - Conserved hypothetical protein 6e-29 At2g43945 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 97.3 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 6e-113 410 Os05g0517200 AK072066.1 - Glycosyl transferase, family 20 domain containingprotein 3e-11 At1g06410 ATTPS7 C.G. S.X.
0.31 3e-28 129 Os01g0730300 AK109542.1 - Glycosyl transferase, family 20 domain containingprotein 2e-15 At1g70290 ATTPS8 C.G. S.X.
0.19 3e-177 621 Os04g0309100 AK069240.1 - NAD(P)H-quinone oxidoreductase chain 2,chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 2)(NADH-plastoquinone oxidoreductase chain 2) 4e-57 Atcg00440 - C.G. S.X.
0.07 7e-17 91 Os03g0224300 AK100541.1 - Glycosyl transferase, family 20 domain containingprotein 7e-9 At1g68020 ATTPS6 C.G. S.X.
0.06 2e-8 63 Os04g0688200 AK101245.1 - Anionic peroxidase precursor 3e-5 At1g60140 ATTPS10 (trehalose phosphate synthase) C.G. S.X.
0.06 2e-8 63 Os08g0414700 AK099398.1 - Glycosyl transferase, family 20 domain containingprotein 3e-5 At1g60140 ATTPS10 (trehalose phosphate synthase) C.G. S.X.
0.05 2e-13 79 Os09g0397300 AK105382.1 - Glycosyl transferase, family 20 domain containingprotein 7e-28 At1g68020 ATTPS6 C.G. S.X.
0.03 6e-14 81 Os09g0376800 AK067023.1 - The stop codon is not identified. 2e-7 At1g70290 ATTPS8 C.G. S.X.
0.03 5e+0 32 Os07g0420500 9635.m02275 - - 4e-1 At2g34820 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 5e+0 32 Os01g0861300 NM_190709.1 - - 5e-2 At4g31805 WRKY family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-12 75 Arabidopsis thaliana At1g06410 837152 ATTPS7 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. - - - C.G. S.X.
0.11 7e-13 77 Glycine max Gma.5823.1.S1_at BM523758 - - 2e-12 At1g06410 ATTPS7 C.G. S.X.
0.63 0 2022 Hordeum vulgare Contig4657_at Contig4657 - - 3e-5 At1g23870 ATTPS9 C.G. S.X.
0.10 4e-11 71 Populus trichocarpa PtpAffx.208859.1.S1_at pmrna17561 hypothetical protein - 2e-88 At1g68020 ATTPS6 C.G. S.X.
0.52 0 1517 Triticum aestivum Ta.30416.1.S1_at CK205280 - - 3e-4 At1g23870 ATTPS9 C.G. S.X.
0.09 2e-22 107 Vitis vinifera 1618726_at CB973545 hypothetical protein LOC100265140 - 2e-27 At1g06410 ATTPS7 C.G. S.X.
0.37 0 908 Zea mays Zm.3961.1.S1_at CK370362 hypothetical protein LOC100272531 - 3e-7 At1g70290 ATTPS8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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