Gene omics information

Query gene ID	Os01g0744300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	73.7	Os01g0744300	NM_191171.1	-	Casein kinase-like protein	4e-15	At2g25760	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os09g0281600	AK067020.1	-	SWAP/Surp domain containing protein	6e-12	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0537800	AK059388.1	-	The start codon is not identified.	4e-2	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os08g0502800	AK105444.1	-	SWIB/MDM2 domain containing protein	2e-5	At4g22360	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os03g0786800	AK059186.1	-	The start codon is not identified.	4e-54	At5g46210	CUL4 (CULLIN4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os07g0497000	AK100332.1	-	Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2)	2e-48	At5g44800	CHR4 (CHROMATIN REMODELING 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os03g0750800	AK061386.1	-	Transcriptional adaptor ADA2b (AT4g16420/dl4235c)	9e-11	At4g16420	ADA2B (HOMOLOG OF YEAST ADA2 2B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.3	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
4.2	96.0	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.0	95.9	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.9	95.8	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.9	95.8	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.8	95.7	GSM195221	Ovary 1, biological rep 1	GSE7951	Genome-wide gene expression profiling of rice stigma
3.6	95.5	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6	95.5	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.5	95.3	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.5	95.3	GSM195223	Ovary 3, biological rep 3	GSE7951	Genome-wide gene expression profiling of rice stigma

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-145	517	Os05g0200500	AK100357.1	-	Serine/threonine protein kinase	3e-38	At2g25760	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	4e-30	135	Os01g0198200	NM_188260.1	-	Casein kinase-like protein	2e-38	At2g25760	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	3e-18	95	Os01g0772600	AK120893.1	-	Casein kinase-like protein	6e-43	At3g03940	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	3e-12	75	Os03g0793500	AK121620.1	-	Casein kinase-like protein	4e-38	At3g03940	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	4e-11	71	Os07g0171300	AK100663.1	-	Protein kinase domain containing protein	4e-53	At3g03940	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-3	46	Os11g0601500	9639.m03532	-	Protein kinase family protein	7e-5	At4g05200	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-1	40	Os03g0556600	AK066162.1	-	-	2e-9	At4g21380	ARK3 (A. THALIANA RECEPTOR KINASE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-1	40	Os12g0605200	AK102398.1	-	Hypothetical protein	5e-29	At1g03080	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	4e-15	83	Arabidopsis thaliana	At2g25760	817118	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-19	97	Glycine max	GmaAffx.77608.1.S1_at	BI498177	-	-	7e-27	At2g25760	protein kinase family protein	C.G.	S.X.	Please select
0.38	1e-136	486	Hordeum vulgare	Contig11330_at	Contig11330	-	-	2e-15	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.20	1e-28	129	Populus trichocarpa	PtpAffx.214112.1.S1_at	pmrna27471	hypothetical protein	-	3e-124	At2g25760	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-27	125	Triticum aestivum	Ta.7089.1.S1_at	CD872336	casein kinase-like protein	-	2e-13	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.11	8e-23	107	Vitis vinifera	1622362_at	CD802017	hypothetical protein LOC100254265	-	6e-34	At2g25760	protein kinase family protein	C.G.	S.X.	Please select
0.13	6e-3	42	Zea mays	Zm.5471.1.A1_at	BG841029	hypothetical protein LOC100273539	-	3e-38	At3g13670	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006414	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
L	GO:0006468	The process of introducing a phosphate group on to a protein.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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