CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0743300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 51.1 Os01g0743300 AK069026.1 - Protease-associated PA domain containing protein 2e-2 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) S.X. H.G.
0.55 73.7 Os02g0150700 AK120070.1 - Zn-finger, RING domain containing protein 5e-3 At5g10650 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.38 46.9 Os04g0590400 AK100784.1 - GRAS transcription factor domain containingprotein 6e-6 At1g07520 scarecrow transcription factor family protein S.X. H.G.
0.29 31.1 Os01g0347100 CA763426 - Protein of unknown function DUF1399 family protein 5e-3 At1g56230 unknown protein S.X. H.G.
0.27 27.5 Os06g0251200 AK067034.1 - MATH domain containing protein 1e+0 At5g46530 - S.X. H.G.
0.07 3.7 Os01g0235300 AK059862.1 - SOUL heme-binding protein family protein 8e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 98.7 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.9 98.3 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
11.1 98.2 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.1 98.2 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.4 97.7 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
6.4 97.2 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.2 97.1 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.8 97.0 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.5 96.8 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-31 139 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) C.G. S.X.
0.02 2e-1 38 Os01g0948400 AK067368.1 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2)(P5CR) (P5C reductase) 1e+1 At5g14800 P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Arabidopsis thaliana At3g54720 824637 AMP1 (ALTERED MERISTEM PROGRAM 1) Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. - - - C.G. S.X.
0.05 7e-3 44 Glycine max GmaAffx.48644.1.S1_at AW620338 - - 9e-13 At5g19740 peptidase M28 family protein C.G. S.X.
0.25 7e-50 198 Hordeum vulgare Contig13378_at Contig13378 - - 6e+0 At4g38430 ROPGEF1 C.G. S.X.
0.07 7e-6 54 Populus trichocarpa PtpAffx.22300.1.S1_at CF228629 hypothetical protein - 5e-7 At5g19740 peptidase M28 family protein C.G. S.X.
0.36 2e-104 381 Triticum aestivum Ta.27238.1.S1_at BT009569.1 - - 3e-8 At5g19740 peptidase M28 family protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1612248_at CB838023 - - 3e-1 At1g16740 ribosomal protein L20 family protein C.G. S.X.
0.26 9e-40 165 Zea mays Zm.15390.1.A1_at BM267333 hypothetical protein LOC100280068 - 4e-7 At5g19740 peptidase M28 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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