CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0686800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0686800 D38231.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 1e-23 At1g18080 ATARCA S.X. H.G.
0.82 95.0 Os12g0167900 D12630.1 - 60S ribosomal protein L3 1e-116 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) S.X. H.G.
0.78 93.4 Os04g0598200 BX897823 - 60S ribosomal protein L12 2e-21 At3g53430 60S ribosomal protein L12 (RPL12B) S.X. H.G.
0.77 93.1 Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) S.X. H.G.
0.76 92.2 Os02g0478700 AK099723.1 - Ribosomal protein S27 (AT3g61110/T27I15_200) 4e-19 At3g61110 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) S.X. H.G.
0.76 92.2 Os02g0229000 AK058248.1 - 40S ribosomal protein S19-like 1e-13 At3g04920 40S ribosomal protein S24 (RPS24A) S.X. H.G.
0.74 91.4 Os11g0220800 AK060902.1 - 60S ribosomal protein L10 (QM protein homolog) 8e-71 At1g14320 SAC52 (SUPPRESSOR OF ACAULIS 52) S.X. H.G.
0.71 89.6 Os02g0814700 AK121994.1 - 60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)] 4e-78 At1g04480 60S ribosomal protein L23 (RPL23A) S.X. H.G.
0.70 88.4 Os11g0168200 AK073392.1 - 60S ribosomal protein L3 4e-95 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) S.X. H.G.
0.68 87.5 Os02g0821200 AK062099.1 - Ribosomal L28e protein family protein 9e-9 At2g19730 60S ribosomal protein L28 (RPL28A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 96.6 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7 96.4 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6 96.3 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
4.1 96.0 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 0 708 Os05g0552300 AK062179.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 2e-19 At1g18080 ATARCA C.G. S.X.
0.03 1e-3 46 Os11g0572000 9639.m03278 - - 3e+0 At3g54940 - C.G. S.X.
0.02 9e-5 50 Os04g0423400 AK061494.1 - ABA/WDS induced protein family protein 1e-1 At1g55160 unknown protein C.G. S.X.
0.01 4e-4 48 Os06g0338700 9634.m02278 - Copper amine oxidase family protein 2e-1 At1g21370 unknown protein C.G. S.X.
0.01 4e-4 48 Os12g0561900 AK121202.1 - Conserved hypothetical protein 9e-1 At1g02813 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-23 111 Arabidopsis thaliana At1g18080 838388 ATARCA Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. - - - C.G. S.X.
0.37 3e-59 230 Glycine max GmaAffx.92405.1.S1_s_at CF808130 G beta-like protein - 2e-49 At1g18080 ATARCA C.G. S.X.
0.64 0 944 Hordeum vulgare Contig1031_at Contig1031 - - 1e-14 At1g18080 ATARCA C.G. S.X.
0.11 7e-11 69 Populus trichocarpa PtpAffx.1601.8.S1_s_at CV253694 hypothetical protein - 5e-17 At1g18080 ATARCA C.G. S.X.
0.61 0 817 Triticum aestivum Ta.23073.1.S1_at BJ250184 - - 6e-20 At1g18080 ATARCA C.G. S.X.
0.26 2e-38 159 Vitis vinifera 1615312_at CF568840 - - 6e-33 At1g18080 ATARCA C.G. S.X.
0.55 0 835 Zea mays Zm.6045.2.A1_a_at BM337093 guanine nucleotide-binding protein beta subunit-like protein - 2e-10 At1g18080 ATARCA C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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