Gene omics information

Query gene ID	Os01g0680200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os01g0680200	AK121881.1	-	-	2e-1	At1g54215	proline-rich family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os04g0588700	AK099941.1	-	ABC transporter, transmembrane region domaincontaining protein	9e-6	At3g59140	ATMRP14	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os04g0610900	AK120898.1	-	EDR1	9e-5	At4g24480	serine/threonine protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os12g0490000	CA762266	-	Mitochodrial transcription terminationfactor-related family protein	5e+0	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0740500	9629.m05236	-	Transferrin receptor-like dimerisation regiondomain containing protein	2e-5	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os07g0280200	AK108656.1	-	AMP-dependent synthetase and ligase domaincontaining protein	2e-2	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.8	99.1	GSM262014	Nipponbare, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.0	99.0	GSM100439	Rice Azucena 0ppm Arsenate (Control) Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
18.9	99.0	GSM100440	Rice Azucena 0ppm Arsenate (Control) Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.8	98.6	GSM262018	Nipponbare, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.4	98.6	GSM262016	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.0	98.5	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.6	98.5	GSM262017	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.4	98.5	GSM262015	Nipponbare, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.0	98.3	GSM262012	Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.0	98.3	GSM262010	Nipponbare, 2 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	1e-59	232	Os05g0556800	AK109887.1	-	Protein of unknown function DUF250 domaincontaining protein	7e-1	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	0	1201	Os01g0680100	AK109677.1	-	Conserved hypothetical protein	2e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	8e-18	93	Os01g0504100	AK106017.1	-	Protein of unknown function DUF250 domaincontaining protein	1e-2	At1g30840	ATPUP4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	1e-7	59	Os03g0187800	AK105352.1	-	Protein of unknown function DUF250 domaincontaining protein	3e+0	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-1	40	Os04g0607300	9632.m05010	-	-	6e-2	At2g03610	F-box family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-2	42	Os06g0639500	AK068750.1	-	Protein kinase domain containing protein	5e-6	At4g32250	protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-2	42	Os11g0471300	AK065835.1	-	Conserved hypothetical protein	3e-2	At5g60945	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At1g54215	841862	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.74014.1.S1_at	AW306452	-	-	2e-3	At3g45160	unknown protein	C.G.	S.X.	Please select
0.41	1e-59	230	Hordeum vulgare	Contig15320_at	Contig15320	-	-	6e-1	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please select
0.02	1e+0	36	Populus trichocarpa	PtpAffx.220271.1.S1_at	pmrna36639	hypothetical protein	-	7e-1	At2g22470	AGP2 (ARABINOGALACTAN PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-32	141	Triticum aestivum	Ta.3801.1.A1_at	BJ247875	-	-	2e+0	At5g63085	-	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615016_at	BQ794197	hypothetical protein LOC100241603	-	7e-2	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please select
0.02	9e-2	38	Zea mays	Zm.9750.1.A1_at	BM350639	-	-	5e+0	At1g62820	calmodulin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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