CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0678600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0678600 AK120629.1 - Ribosomal protein S20 family protein 1e-1 At4g30460 glycine-rich protein S.X. H.G.
0.83 95.8 Os02g0822600 AK060728.1 - 50S ribosomal protein L9, chloroplast precursor(CL13) 2e+0 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) S.X. H.G.
0.77 93.1 Os04g0461100 AK068022.1 - Plastid and cyanobacterial ribosomal proteinPSRP-3/Ycf65 family protein 8e-12 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.73 91.1 Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) S.X. H.G.
0.67 87.2 Os03g0219900 AK066527.1 - 50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment) 5e-1 At3g25920 RPL15 S.X. H.G.
0.67 87.2 Os01g0749200 AK104146.1 - 50S ribosomal protein L13 1e-20 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 96.8 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.5 96.8 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.8 96.5 GSM421667 XOC, 2 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.7 96.4 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.4 96.2 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.3 96.1 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.2 96.0 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Os09g0437500 AK099618.1 - Dormancyauxin associated family protein 3e+0 At1g12810 proline-rich family protein C.G. S.X.
0.04 6e-2 40 Os04g0441000 9632.m03472 - - 5e-1 At2g02490 unknown protein C.G. S.X.
0.03 1e-3 46 Os01g0135900 AK062091.1 - LMW heat shock protein 3e-2 At1g75550 glycine-rich protein C.G. S.X.
0.03 4e-3 44 Os02g0709600 AK101923.1 - Plant-specific domain of unknown function 3588containing protein 4e-5 At2g41660 MIZ1 (mizu-kussei 1) C.G. S.X.
0.03 4e-3 44 Os08g0515000 9636.m04085 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein C.G. S.X.
0.02 1e-2 42 Os08g0174500 AY062182.1 - HAP3 5e-24 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA - - - C.G. S.X.
0.03 6e-1 36 Glycine max PsAffx.CL429Contig1_at PsAffx.CL429Contig1 - - 3e-1 At3g06040 ribosomal protein L12 family protein C.G. S.X.
0.43 2e-100 365 Hordeum vulgare Contig4215_at Contig4215 - - 2e+0 At2g28060 protein kinase-related C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.69400.1.A1_s_at CV258451 hypothetical protein - 7e-1 At3g27600 RNA binding C.G. S.X.
0.38 1e-87 323 Triticum aestivum Ta.1378.1.S1_at CK158480 - - 2e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.32 8e-78 289 Zea mays Zm.6652.1.A1_at BM347691 ribosomal protein rpS20 - 1e-1 At3g15190 chloroplast 30S ribosomal protein S20, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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