CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0672800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os01g0672800 AK101605.1 - Protein of unknown function DUF1421 family protein 3e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) S.X. H.G.
0.46 60.9 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 S.X. H.G.
0.38 46.9 Os06g0717100 AK071437.1 - Senescence-associated family protein 9e-4 At3g51250 senescence/dehydration-associated protein-related S.X. H.G.
0.18 13.7 Os02g0780700 AK063558.1 - Lipase, class 3 family protein 4e-10 At3g14075 lipase class 3 family protein S.X. H.G.
0.15 10.3 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein S.X. H.G.
0.15 10.3 Os05g0407500 AK074026.1 - Esterase/lipase/thioesterase domain containingprotein 3e-1 At5g11600 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.6 98.5 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM159196 Inflorescence (P3, 5 - 10 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.3 97.9 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM159192 Inflorescence (P2, 3 - 5 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.8 97.8 GSM159195 Inflorescence (P3, 5 - 10 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.8 97.8 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.9 97.6 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.6 97.5 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.4 97.2 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.3 97.2 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Os03g0151500 AK109181.1 - Hypothetical protein 1e+0 At1g35430 unknown protein C.G. S.X.
0.01 4e-2 42 Os05g0203400 9633.m00999 - Conserved hypothetical protein 3e-1 At1g02405 proline-rich family protein C.G. S.X.
0.01 4e-2 42 Os07g0585900 NM_187015.1 - - 1e-1 At3g44950 glycine-rich protein C.G. S.X.
0.01 1e-1 40 Os03g0172700 AK111307.1 - Hypothetical protein 1e+0 At2g40500 protein kinase family protein C.G. S.X.
0.01 1e-1 40 Os04g0499300 AY224450.1 - Initiation factor eIF-4 gamma, middle domaincontaining protein 6e-12 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative C.G. S.X.
0.01 1e-1 40 Os06g0612900 9634.m03944 - Conserved hypothetical protein 4e-7 At5g12960 catalytic C.G. S.X.
0.01 1e-1 40 Os08g0498100 AB110168.1 - Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)(Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2)(CCoAOMT-2) 2e+0 At3g54000 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Arabidopsis thaliana At5g39950 833992 ATTRX2 (THIOREDOXIN 2) encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. - - - C.G. S.X.
0.02 3e-2 42 Glycine max PsAffx.psMC004xJ11f_at PsAffx.psMC004xJ11f - - 1e+0 At5g45870 Bet v I allergen family protein C.G. S.X.
0.52 4e-91 335 Hordeum vulgare Contig12711_at Contig12711 - - 7e-1 At3g24810 ICK3 C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.61084.1.S1_at DN486528 - - 4e-4 At5g03070 IMPA-9 (IMPORTIN ALPHA ISOFORM 9) C.G. S.X.
0.19 6e-18 93 Triticum aestivum Ta.21199.1.S1_at CA615116 - - 5e+0 At5g42591 unknown protein C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1619512_s_at CD009782 - - 1e-3 At5g22060 ATJ2 C.G. S.X.
0.01 5e-1 36 Zea mays Zm.2033.1.A1_at CO524092 hypothetical protein LOC100274598 - 2e+0 At1g19160 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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