CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0660200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os01g0660200 AB026998.1 - Acidic class III chitinase OsChib3a precursor(Chitinase) (EC 3.2.1.14) 1e+1 At3g07090 unknown protein S.X. H.G.
0.29 31.1 Os04g0167800 AK108398.1 - Chalcone reductase homologue (Fragment) 2e+0 At3g14030 - S.X. H.G.
0.15 10.3 Os10g0491000 AK100816.1 - Plant Basic Secretory Protein family protein 2e+0 At2g15220 secretory protein, putative S.X. H.G.
0.07 3.7 Os09g0572700 AK063784.1 - Plastocyanin-like domain containing protein 1e-1 At4g32340 - S.X. H.G.
0.05 2.5 Os10g0101100 AK106667.1 - Peptidase S10, serine carboxypeptidase familyprotein 2e-1 At5g36180 scpl1 (serine carboxypeptidase-like 1) S.X. H.G.
0.04 2.0 Os09g0467200 AF402804.1 - Probable glutathione S-transferase (EC 2.5.1.18)(Auxin-induced protein PGNT1/PCNT110) 5e-1 At2g07772 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.0 99.6 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
25.1 99.5 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
24.4 99.4 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.5 97.5 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.3 97.5 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.2 97.4 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
7.0 97.4 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.0 97.4 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.9 97.3 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.8 97.3 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 9e-17 89 Os01g0303100 AK062603.1 - Chitinase (EC 3.2.1.14) 1e+1 Atcg00630 - C.G. S.X.
0.24 6e-21 103 Os01g0860500 AB003195.1 - Chitinase (EC 3.2.1.14) 4e-2 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.21 4e-19 97 Os01g0860400 AK111415.1 - Acidic endochitinase precursor (EC 3.2.1.14) 3e+0 At4g30050 unknown protein C.G. S.X.
0.19 3e-23 111 Os01g0691000 AK111427.1 - Acidic class III chitinase OsChib3a precursor(Chitinase) (EC 3.2.1.14) 1e+1 At5g14730 unknown protein C.G. S.X.
0.17 4e-22 107 Os01g0687400 AK106178.1 - Chitinase (EC 3.2.1.14) 6e-1 At2g47910 CRR6 (chlororespiratory reduction 6) C.G. S.X.
0.12 4e-13 77 Os04g0347100 AU197402 - Conserved hypothetical protein 7e+0 At2g33190 F-box family protein C.G. S.X.
0.04 2e-8 61 Os07g0632000 AK111717.1 - Xylanase inhibitor protein I precursor 6e-1 At5g28040 transcription regulator C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 32 Arabidopsis thaliana At3g07090 819895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF - - - C.G. S.X.
0.03 4e-3 44 Glycine max GmaAffx.494.1.S1_at AI938330 - - 1e+0 At5g41420 unknown protein C.G. S.X.
0.30 1e-55 216 Hordeum vulgare Contig23540_at Contig23540 - - 2e+1 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.03 4e-3 44 Populus trichocarpa PtpAffx.211578.1.S1_at pmrna22689 hypothetical protein - 3e-2 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.49 4e-64 246 Triticum aestivum Ta.15697.1.S1_at CA486351 - - 9e+0 At1g29962 AGL64 (AGAMOUS-LIKE 64) C.G. S.X.
0.10 3e-3 42 Vitis vinifera 1618373_at Z68123.1 acidic chitinase - 2e-13 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.47 2e-85 315 Zea mays Zm.1085.1.A1_a_at BM339391 PRm 3 - 3e+0 At5g41960 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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