CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0633000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os01g0633000 AK062051.1 - Ribosomal protein L31 family protein 4e-1 At4g03590 - S.X. H.G.
0.80 94.6 Os08g0119800 AK060602.1 - - 3e-2 At2g33510 protein binding S.X. H.G.
0.77 93.1 Os03g0778100 AK060493.1 - Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) 6e-7 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.69 87.9 Os12g0274700 AF017364.1 - Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment) 9e-9 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) S.X. H.G.
0.67 87.2 Os08g0560900 AK072473.1 - Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D) 2e-6 At4g02770 PSAD-1 (photosystem I subunit D-1) S.X. H.G.
0.65 83.8 Os06g0320500 AF094776.1 - Chlorophyll a/b-binding protein 4e-9 At3g54890 LHCA1 S.X. H.G.
0.62 81.5 Os07g0141400 AF022732.1 - 23 kDa polypeptide of photosystem II 2e-13 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
0.59 78.0 Os08g0200300 U86018.1 - Photosystem II 10 kDa polypeptide, chloroplastprecursor 2e-5 At1g79040 PSBR (photosystem II subunit R) S.X. H.G.
0.58 77.0 Os07g0544800 AK069170.1 - Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP) 1e-4 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) S.X. H.G.
0.57 77.0 Os05g0496200 AK062214.1 - - 1e-73 At1g56190 phosphoglycerate kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 96.9 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.7 96.9 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.2 96.7 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
5.0 96.6 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
4.9 96.5 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.8 96.5 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.7 96.4 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.7 96.4 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.6 96.3 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.5 96.3 GSM421679 XOC, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Os03g0769100 AB022675.1 - 9S ribosomal protein 5e-1 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) C.G. S.X.
0.03 5e-2 40 Os12g0552500 BI809490 - Universal stress protein (Usp) family protein 3e-1 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.02 5e-2 40 Os01g0231000 AK066156.1 - Auxin-responsive protein (Aux/IAA) (Fragment) 2e-13 At1g04240 SHY2 (SHORT HYPOCOTYL 2) C.G. S.X.
0.02 5e-2 40 Os04g0394200 AK068154.1 - Rattus norvegicus DLST dihydrolipoamidesuccinyltransferase, exon 15 and complete cds 1e-39 At5g55070 2-oxoacid dehydrogenase family protein C.G. S.X.
0.02 5e-2 40 Os12g0512000 9640.m03186 - Flavin monoxygenase-like protein floozy 3e-3 At4g28720 flavin-containing monooxygenase family protein / FMO family protein C.G. S.X.
0.01 1e-2 42 Os05g0549100 AK072422.1 - Casein kinase II, alpha' chain (CK II) (EC2.7.1.37) 1e-27 At1g68830 STN7 (Stt7 homolog STN7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At4g03590 825659 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBV - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psZO007iC08r_s_at PsAffx.psZO007iC08r - - 1e+0 At2g27180 unknown protein C.G. S.X.
0.40 1e-126 452 Hordeum vulgare Contig3853_s_at Contig3853 - - 6e+0 At5g11860 NLI interacting factor (NIF) family protein C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.140955.1.A1_at CV233539 hypothetical protein - 2e-21 At1g21740 unknown protein C.G. S.X.
0.47 2e-129 462 Triticum aestivum Ta.2429.2.S1_a_at CK215557 - - 5e+0 At1g27530 - C.G. S.X.
0.07 2e-3 42 Vitis vinifera 1619816_at CA817914 hypothetical protein LOC100250681 - 2e-11 At1g75350 emb2184 (embryo defective 2184) C.G. S.X.
0.41 7e-140 496 Zea mays Zm.1899.1.A1_at BM333426 hypothetical protein LOC100216899 - 2e+0 At1g47270 AtTLP6 (TUBBY LIKE PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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