Gene omics information

Query gene ID	Os01g0612200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	93.1	Os01g0612200	AK071340.1	-	Cytochrome c oxidase subunit Vb	4e-17	At1g80230	cytochrome c oxidase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os09g0361400	AK060652.1	-	Voltage-dependent anion channel	6e-1	At5g15000	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0816800	AK102271.1	-	Conserved hypothetical protein	4e-24	At2g20360	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	31.1	Os08g0431500	AK058993.1	-	Conserved hypothetical protein	3e-20	At4g16450	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os07g0640100	AK070897.1	-	Complex 1 LYR protein family protein	7e-3	At3g12260	complex 1 family protein / LVR family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os06g0251100	AK063780.1	-	Membrane attack complexcomponent/perforin/complement C9 family protein	1e+0	At5g41960	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	97.2	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1	97.1	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.8	97.0	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.5	96.8	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2	96.7	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.2	96.7	GSM275408	Bala root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0	96.6	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0	96.6	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8	96.5	GSM302921	root_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
4.7	96.4	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-41	171	Os06g0142700	AK071423.1	-	Cytochrome c oxidase subunit Vb	2e-15	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e-3	46	Os03g0837500	9631.m06136	-	-	4e-1	At3g44950	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	4e-3	44	Os01g0558000	9629.m03576	-	-	1e-3	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	4e-3	44	Os06g0133200	AU173972	-	Hypothetical protein	3e+0	At3g28321	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-4	48	Os05g0414100	9633.m03166	-	Transcription factors TFIIS, elongin A, CRSP70,conserved domain containing protein	2e-2	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-3	46	Os09g0530200	AK120767.1	-	CMCase	2e-2	At4g23560	AtGH9B15 (Arabidopsis thaliana glycosyl hydrolase 9B15)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-3	44	Os10g0471700	AK073804.1	-	Cyclin-dependent kinase inhibitor 7	2e-3	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-17	89	Arabidopsis thaliana	At1g80230	844363	cytochrome c oxidase family protein	F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial envelope, mitochondrion;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-7	57	Glycine max	GmaAffx.93110.1.S1_x_at	CF808835	-	-	1e-32	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.51	5e-126	450	Hordeum vulgare	Contig5256_at	Contig5256	-	-	3e-11	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.07	3e-18	93	Populus trichocarpa	Ptp.287.1.A1_s_at	AJ774516	hypothetical protein	-	1e-38	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	1e-122	440	Triticum aestivum	Ta.815.1.S1_s_at	CK195825	-	-	9e-3	At1g52710	cytochrome c oxidase-related	C.G.	S.X.	Please select
0.04	7e-13	73	Vitis vinifera	1619754_at	BQ800202	similar to cytochrome c oxidase family protein-like	-	3e-43	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.57	6e-119	426	Zea mays	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
S	GO:0006123	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
S	GO:0009060	The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
L	GO:0022900	A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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