CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0611000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os01g0611000 AK072500.1 - Protein of unknown function DUF642 family protein 3e+0 At1g10790 - S.X. H.G.
0.60 79.7 Os04g0689500 AK060983.1 - Conserved hypothetical protein 7e-1 At5g60615 - S.X. H.G.
0.48 63.7 Os05g0563600 AK099313.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At5g09310 unknown protein S.X. H.G.
0.48 63.7 Os05g0176100 AK067850.1 - Cellulose synthase-1 3e-82 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) S.X. H.G.
0.44 58.1 Os05g0386800 AK070472.1 - - 2e-17 At5g60920 COB (COBRA) S.X. H.G.
0.42 53.9 Os03g0736300 AK070408.1 - Endo-1,4-beta-glucanase (EC 3.2.1.4) 1e-9 At4g24260 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) S.X. H.G.
0.40 51.1 Os08g0321000 AK068096.1 - Beta-Ig-H3/fasciclin domain containing protein 2e-1 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) S.X. H.G.
0.38 46.9 Os07g0424400 AK120236.1 - Cellulose synthase-7 1e-51 At2g21770 CESA9 (CELLULOSE SYNTHASE A9) S.X. H.G.
0.16 11.3 Os05g0413200 AB104732.1 - Beta-tubulin 4e-114 At5g62690 TUB2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 98.6 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.9 98.0 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
8.5 97.7 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
8.4 97.7 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
8.1 97.7 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
8.0 97.6 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.7 97.6 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
6.1 97.1 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.8 96.5 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.8 96.5 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 6e-34 147 Os04g0494900 AK073892.1 - Protein of unknown function DUF642 family protein 3e+0 At1g09260 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.33 4e-29 131 Os04g0495000 9632.m03982 - Galactose-binding like domain containing protein 4e-2 At1g80240 unknown protein C.G. S.X.
0.32 5e-50 200 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative C.G. S.X.
0.30 2e-30 135 Os04g0494800 AK072539.1 - Protein of unknown function DUF642 family protein 3e+0 At1g30880 unknown protein C.G. S.X.
0.29 0 1152 Os05g0469800 AK100501.1 - Pyruvate decarboxylase (EC 4.1.1.1) (Fragment) 4e-10 At5g01320 pyruvate decarboxylase, putative C.G. S.X.
0.21 3e-20 101 Os02g0205200 AK106819.1 - Protein of unknown function DUF642 family protein 5e-2 At2g15930 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e+0 34 Arabidopsis thaliana At1g10790 837622 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.07 1e-3 46 Glycine max Gma.12342.1.S1_s_at CD405864 - - 3e-6 At5g11420 - C.G. S.X.
0.55 0 831 Hordeum vulgare Contig2474_at Contig2474 - - 2e-1 At1g80240 unknown protein C.G. S.X.
0.03 5e+0 34 Populus trichocarpa PtpAffx.736.1.S1_at CV236187 hypothetical protein - 2e-4 At5g11420 - C.G. S.X.
0.53 0 787 Triticum aestivum Ta.9151.1.S1_x_at CK215909 - - 1e+1 At1g71780 unknown protein C.G. S.X.
0.03 3e-4 46 Vitis vinifera 1619831_a_at BQ794924 hypothetical protein LOC100252479 - 6e-10 At4g32460 - C.G. S.X.
0.19 2e-76 286 Zea mays Zm.7364.1.A1_at BM078096 - - 2e+0 At5g25750 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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