CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0610500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0610500 AK105469.1 - Conserved hypothetical protein 1e-14 At3g05280 integral membrane Yip1 family protein S.X. H.G.
0.53 71.3 Os11g0433500 AK067849.1 - Protein transport protein Sec23A (SEC23-relatedprotein A) 1e-9 At4g14160 transport protein, putative S.X. H.G.
0.50 68.0 Os01g0338000 AK112012.1 - GTP-binding protein SAR1A 1e-45 At3g62560 GTP-binding protein, putative S.X. H.G.
0.40 51.1 Os03g0783700 AF443602.1 - Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit) 5e-19 At2g17380 AP19 S.X. H.G.
0.36 44.0 Os04g0612600 AB042115.1 - Coatomer-like protein, epsilon subunit 8e-25 At2g34840 coatomer protein epsilon subunit family protein / COPE family protein S.X. H.G.
0.32 36.3 Os05g0461000 AB042259.1 - Clathrin adaptor complex, small chain familyprotein 5e-1 At4g08520 clathrin adaptor complex small chain family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 96.5 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
3.9 95.8 GSM254095 Rice suppressed OsSKIPa, biological repeat 3 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
3.7 95.6 GSM254093 Rice suppressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
3.7 95.6 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 5e+0 34 Os11g0513600 9639.m02853 - - 2e+0 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-14 81 Arabidopsis thaliana At3g05280 819692 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP - - - C.G. S.X.
0.10 6e-5 50 Glycine max Gma.739.1.S1_at BG882670 - - 6e-15 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.62 0 819 Hordeum vulgare Contig9005_at Contig9005 - - 1e-14 At3g05280 integral membrane Yip1 family protein C.G. S.X.
0.10 2e-1 38 Populus trichocarpa Ptp.460.1.A1_at CK087646 hypothetical protein - 1e-34 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.21 6e-63 242 Triticum aestivum Ta.7590.2.S1_a_at CK215141 - - 9e-8 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1612597_at CD797662 hypothetical protein LOC100245968 - 3e-5 At4g22745 MBD1 C.G. S.X.
0.64 0 759 Zea mays Zm.3919.1.S1_at BG840867 hypothetical protein LOC100194180 - 7e-16 At3g05280 integral membrane Yip1 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage