CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0609900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 53.9 Os01g0609900 AK121722.1 - PDR-like ABC transporter (PDR4 ABC transporter) 8e-22 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) S.X. H.G.
0.77 93.1 Os06g0218900 9634.m01125 - LMBR1-like conserved region domain containingprotein 3e-1 At1g02450 NIMIN1 (NIM1-INTERACTING 1) S.X. H.G.
0.74 91.4 Os05g0135400 AK063587.1 - Plant peroxidase family protein 4e-1 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) S.X. H.G.
0.70 88.4 Os10g0139700 AK067458.1 - Cytochrome P450 family protein 2e-4 At1g64940 CYP89A6 S.X. H.G.
0.67 87.2 Os03g0187800 AK105352.1 - Protein of unknown function DUF250 domaincontaining protein 3e+0 At5g58490 cinnamoyl-CoA reductase family S.X. H.G.
0.67 87.2 Os04g0597800 AK101480.1 - Oligopeptide transporter, kidney isoform (Peptidetransporter 2) (Kidney H+/peptide cotransporter) 2e-2 At5g19640 proton-dependent oligopeptide transport (POT) family protein S.X. H.G.
0.63 82.7 Os11g0482200 AK062443.1 - Hypothetical protein 3e-1 At2g34585 unknown protein S.X. H.G.
0.60 79.7 Os04g0634500 AK071656.1 - KI domain interacting kinase 1 1e-5 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.6 99.7 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
28.7 99.6 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
26.4 99.5 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
21.5 99.2 GSM154940 Root_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
18.6 99.0 GSM154941 Root_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
18.4 99.0 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
14.1 98.5 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.4 98.5 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
13.0 98.4 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.3 97.9 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 1536 Os01g0342700 AY332479.1 - PDR-like ABC transporter (PDR4 ABC transporter) 3e-24 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.38 9e-88 327 Os01g0609300 AF093586 - PDR-like ABC transporter (PDR3 ABC transporter) 6e-1 At3g18590 plastocyanin-like domain-containing protein C.G. S.X.
0.33 2e-64 250 Os01g0609000 AK103201.1 - PDR1 ABC transporter 1e-3 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.26 1e-28 131 Os09g0332700 9637.m01366 - - 4e-20 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.14 2e-21 107 Os09g0333500 AK072827.1 - PDR-like ABC transporter (PDR3 ABC transporter) 2e-14 At2g36380 PDR6 C.G. S.X.
0.11 3e-44 182 Os08g0384500 AK100858.1 - PDR-like ABC transporter (PDR3 ABC transporter) 2e-33 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.07 2e-24 117 Os10g0205500 AK064534.1 - PDR3 ABC transporter 3e-28 At2g29940 PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-22 107 Arabidopsis thaliana At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. - - - C.G. S.X.
0.06 2e-13 79 Glycine max Gma.5574.2.S1_at BI893662 - - 2e-21 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.28 1e-173 611 Hordeum vulgare Contig8122_at Contig8122 - - 4e-2 At1g66950 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) C.G. S.X.
0.21 3e-37 159 Populus trichocarpa PtpAffx.224322.1.S1_s_at pmrna42769 hypothetical protein - 9e-43 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.38 3e-163 577 Triticum aestivum Ta.6990.1.S1_at CA611113 - - 7e-11 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.02 2e-10 67 Vitis vinifera 1613840_at BQ800291 ABC transporter-like - 6e-7 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.06 3e-13 77 Zea mays Zm.11191.1.A1_at BM339959 - - 6e-7 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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