CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0606900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 92.2 Os01g0606900 AK065697.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 4e-2 At3g08910 DNAJ heat shock protein, putative S.X. H.G.
0.65 83.8 Os01g0702000 AK065414.1 - Conserved hypothetical protein 4e-5 At1g75380 wound-responsive protein-related S.X. H.G.
0.61 81.2 Os03g0265900 AK120374.1 - Conserved hypothetical protein 6e+0 At5g11910 esterase/lipase/thioesterase family protein S.X. H.G.
0.60 79.7 Os03g0679700 AK120238.1 - Thiamine biosynthesis protein thiC 3e-125 At2g29630 THIC (ThiaminC) S.X. H.G.
0.60 79.7 Os10g0533100 AK111957.1 - Conserved hypothetical protein 5e-1 At2g40020 - S.X. H.G.
0.57 77.0 Os08g0139100 AK099590.1 - DAG protein, chloroplast precursor 7e-44 At1g11430 plastid developmental protein DAG, putative S.X. H.G.
0.53 71.3 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein S.X. H.G.
0.47 62.3 Os07g0529600 AB110170.1 - Thiazole biosynthetic enzyme 1-1, chloroplastprecursor 3e-3 At5g54770 THI1 S.X. H.G.
0.45 58.8 Os03g0586500 AK068097.1 - Conserved hypothetical protein 2e-1 At5g22550 unknown protein S.X. H.G.
0.42 53.9 Os02g0539600 AK059666.1 - Myb, DNA-binding domain containing protein 3e-12 At5g63420 emb2746 (embryo defective 2746) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.5 98.6 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.1 98.5 GSM421718 MOCK, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.3 98.4 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3 98.3 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
11.0 98.2 GSM421676 XOC, 8 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.9 98.1 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.9 98.1 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
10.9 98.1 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.4 98.1 GSM421675 XOC, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.2 98.0 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-5 50 Os03g0300600 AK066250.1 - Molecular chaperone 1e-1 At2g47670 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 2e-2 42 Os08g0374400 9636.m02841 - Heat shock protein DnaJ family protein 8e-3 At3g08910 DNAJ heat shock protein, putative C.G. S.X.
0.02 8e-5 50 Os02g0306900 AK070441.1 - DnaJ-like protein 2e-13 At3g08910 DNAJ heat shock protein, putative C.G. S.X.
0.02 3e-4 48 Os05g0562300 AK067414.1 - DnaJ-like protein 4e-24 At4g28480 DNAJ heat shock family protein C.G. S.X.
0.02 1e-3 46 Os01g0118700 AK070385.1 - HGA4 4e-3 At3g18170 transferase, transferring glycosyl groups C.G. S.X.
0.01 2e-2 42 Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 40 Arabidopsis thaliana At3g08910 820040 DNAJ heat shock protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV - - - C.G. S.X.
0.03 3e-3 44 Glycine max Gma.10368.3.S1_a_at BM892017 - - 9e-1 At5g16650 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.28 7e-76 284 Hordeum vulgare Contig12376_at Contig12376 - - 9e+0 At5g56120 unknown protein C.G. S.X.
0.03 3e-3 44 Populus trichocarpa PtpAffx.210469.1.S1_at pmrna20554 hypothetical protein - 3e-1 At3g04090 SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A) C.G. S.X.
0.06 4e-5 50 Triticum aestivum TaAffx.57522.2.S1_at CA605427 - - 3e+0 At4g29510 PRMT11 (ARGININE METHYLTRANSFERASE 11) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1621077_s_at CB975305 hypothetical protein LOC100256381 - 2e-17 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.06 4e-6 52 Zea mays Zm.8958.1.A1_at CK370494 hypothetical protein LOC100274587 - 2e+0 At1g35320 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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