CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0582600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein S.X. H.G.
0.80 94.6 Os01g0934100 AK100995.1 - C2 domain containing protein 7e-1 At5g62720 integral membrane HPP family protein S.X. H.G.
0.63 82.7 Os03g0787000 AK065950.1 - Syntaxin 1e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.60 79.7 Os03g0764100 AF332876.1 - Conserved hypothetical protein 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) S.X. H.G.
0.59 78.0 Os03g0189100 AK066877.1 - Conserved hypothetical protein 2e+0 At5g02150 binding S.X. H.G.
0.55 73.7 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 S.X. H.G.
0.50 68.0 Os05g0497300 AK111755.1 - Ethylene responsive element binding factor 5(AtERF5) 4e-14 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) S.X. H.G.
0.47 62.3 Os04g0685300 AF039532.1 - Harpin-induced 1 domain containing protein 1e-1 At2g24440 selenium binding S.X. H.G.
0.43 55.4 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.8 98.5 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
12.0 98.3 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.8 98.3 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.9 98.1 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.6 98.1 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.3 98.1 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.8 98.0 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.5 97.9 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.5 97.9 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.0 97.8 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 0 841 Os06g0526800 AK120510.1 - Protein phosphatase 2C family protein 7e-2 At5g24940 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.42 3e-76 287 Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein C.G. S.X.
0.27 4e-57 224 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein C.G. S.X.
0.20 1e-32 143 Os05g0183900 9633.m00822 - - 3e+0 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) C.G. S.X.
0.10 7e-31 137 Os05g0184666 9633.m00828 - - 2e+0 At5g38220 hydrolase C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-5 50 Arabidopsis thaliana At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF - - - C.G. S.X.
0.15 3e-20 101 Glycine max GmaAffx.85640.1.S1_at AW703774 - - 1e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.62 0 773 Hordeum vulgare Contig4976_at Contig4976 - - 4e+0 At5g12010 unknown protein C.G. S.X.
0.05 4e-4 48 Populus trichocarpa PtpAffx.29056.1.S1_at DN500805 hypothetical protein - 6e-6 At5g12010 unknown protein C.G. S.X.
0.60 0 1223 Triticum aestivum Ta.10520.1.S1_at AL828817 - - 2e-2 At4g29780 unknown protein C.G. S.X.
0.08 2e-20 99 Vitis vinifera 1619478_at CD004753 hypothetical protein LOC100247440 - 3e-9 At5g12010 unknown protein C.G. S.X.
0.31 9e-129 460 Zea mays Zm.11770.1.A1_at BM380607 hypothetical protein LOC100191551 - 9e-5 At5g12010 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage