CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0580400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os01g0580400 AY332467.1 - Histone-fold domain containing protein 3e+0 At5g63135 unknown protein S.X. H.G.
0.85 96.1 Os01g0174600 AK107662.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 2e-3 At5g36960 unknown protein S.X. H.G.
0.80 94.6 Os05g0304800 9633.m02127 - Histone-fold domain containing protein 5e-1 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) S.X. H.G.
0.77 93.1 Os04g0380800 9632.m02963 - Conserved hypothetical protein 1e+0 At3g17600 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) S.X. H.G.
0.76 92.2 Os05g0156900 CA762976 - Pyrophosphate-energized vacuolar membrane protonpump (EC 3.6.1.1) (Pyrophosphate-energized inorganicpyrophosphatase) (H+PPase) 3e-1 At2g47870 glutaredoxin family protein S.X. H.G.
0.69 87.9 Os06g0115000 AK108096.1 - Conserved hypothetical protein 6e-1 At3g10220 tubulin folding cofactor B S.X. H.G.
0.67 87.2 Os02g0463500 AK107401.1 - Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C) 1e-2 At5g39300 ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) S.X. H.G.
0.65 83.8 Os02g0725900 AJ300218.1 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 2e+0 At4g18970 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.57 77.0 Os04g0505300 BI801070 - Conserved hypothetical protein 4e-1 At5g15725 unknown protein S.X. H.G.
0.56 76.3 Os01g0228500 AK119627.1 - Harpin-induced 1 domain containing protein 7e-1 At2g23310 ATRER1C1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.5 99.9 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
52.7 99.9 GSM240996 Zhonghua11 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
41.4 99.9 GSM240994 Zhonghua11 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
37.9 99.8 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
24.4 99.4 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
19.9 99.1 GSM240997 gif1 7 DAF, biological replicate 1 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
19.4 99.0 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.9 98.5 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
13.0 98.4 GSM240998 gif1 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 0 720 Os01g0346900 9629.m02364 - Histone-fold domain containing protein 7e-1 At2g27220 BLH5 (BELL1-like homeodomain 5) C.G. S.X.
0.02 4e-1 38 Os04g0531300 AK072647.1 - Dihydrouridine synthase, DuS family protein 6e-20 At3g49640 FAD binding / catalytic/ tRNA dihydrouridine synthase C.G. S.X.
0.02 1e+0 36 Os05g0352200 9634.m04936 - - 1e+1 At5g52960 unknown protein C.G. S.X.
0.01 1e+0 36 Os04g0345400 AK121131.1 - Terpene synthase-like domain containing protein 4e-4 At3g14490 terpene synthase/cyclase family protein C.G. S.X.
0.01 1e+0 36 Os04g0691900 AK068257.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 1e-5 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At5g63135 836434 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.37932.1.A1_at BU547732 - - 4e+0 At5g28750 thylakoid assembly protein, putative C.G. S.X.
0.02 6e+0 32 Hordeum vulgare HT09C21r_s_at HT09C21r - - 5e+0 At4g10410 - C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.39736.2.A1_a_at CV263341 cytochrome P450 - 1e-3 At3g26280 CYP71B4 C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.25453.3.A1_at CA636490 - - 3e+0 At5g28650 WRKY74 C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620515_at CF568869 - - 3e-10 At4g29210 GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.16265.1.S1_at CA402929 calmodulin - 2e+0 At3g50250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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