CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0580200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os01g0580200 AK103045.1 - Beta-galactosidase precursor (EC 3.2.1.23)(Lactase) (Acid beta- galactosidase)(Exo-(1-->4)-beta-D-galactanase) 1e-10 At3g52840 BGAL2 (beta-galactosidase 2) S.X. H.G.
0.67 87.2 Os12g0628400 AK061110.1 - Fatty acid hydroxylase domain containing protein 1e-8 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) S.X. H.G.
0.36 44.0 Os12g0262000 AK106352.1 - Hypothetical protein 4e-3 At4g12500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.20 16.5 Os07g0295400 AK060569.1 - Conserved hypothetical protein 6e-5 At1g24310 unknown protein S.X. H.G.
0.19 15.1 Os01g0174500 AK070484.1 - Prolyl 4-hydroxylase, alpha subunit domaincontaining protein 2e+0 At5g18900 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.15 10.3 Os12g0197700 CB629457 - XS zinc finger domain containing protein 1e+0 At5g09710 magnesium transporter CorA-like family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 98.8 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
16.6 98.8 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
16.3 98.8 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
15.9 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.9 98.3 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
8.2 97.7 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
7.9 97.6 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
7.5 97.5 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
7.4 97.5 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-76 289 Os06g0573600 AK105619.1 - Beta-galactosidase precursor (EC 3.2.1.23)(Lactase) 7e-6 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.12 4e-12 75 Os03g0165400 AF508799.1 - Relative to SR12 protein (Fragment) 2e-33 At4g36360 BGAL3 (beta-galactosidase 3) C.G. S.X.
0.07 9e-13 77 Os01g0875500 BE040411 - Beta-galactosidase (EC 3.2.1.23) 8e-2 At5g63810 BGAL10 (beta-galactosidase 10) C.G. S.X.
0.06 2e-20 103 Os03g0255100 AK061989.1 - Beta-galactosidase (EC 3.2.1.23) 3e-8 At2g28470 BGAL8 (beta-galactosidase 8) C.G. S.X.
0.06 4e-15 85 Os10g0330600 AK119350.1 - Glycoside hydrolase, family 35 protein 9e-5 At5g20710 BGAL7 (beta-galactosidase 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-10 69 Arabidopsis thaliana At3g52840 824450 BGAL2 (beta-galactosidase 2) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:apoplast;PBMFOA - - - C.G. S.X.
0.07 6e-7 57 Glycine max GmaAffx.33518.1.S1_at BU760871 - - 2e-26 At3g13750 BGAL1 (Beta galactosidase 1) C.G. S.X.
0.08 9e-13 75 Hordeum vulgare Contig6481_at Contig6481 - - 6e-12 At4g36360 BGAL3 (beta-galactosidase 3) C.G. S.X.
0.12 8e-25 117 Populus trichocarpa PtpAffx.205799.1.S1_at pmrna11462 hypothetical protein - 7e-89 At1g45130 BGAL5 (beta-galactosidase 5) C.G. S.X.
0.15 2e-74 282 Triticum aestivum Ta.24199.3.S1_at BJ245236 - - 9e-1 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.07 3e-5 50 Vitis vinifera 1622421_at CF568853 - - 1e-52 At5g56870 BGAL4 (beta-galactosidase 4) C.G. S.X.
0.01 5e-5 50 Zea mays Zm.5939.1.A1_at AI738346 - - 2e-6 At4g36360 BGAL3 (beta-galactosidase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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