CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0574700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os01g0574700 NM_193609.1 - - 3e-3 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) S.X. H.G.
0.75 91.9 Os06g0680500 AK099745.1 - Glutamate receptor 3.1 precursor (Ligand-gated ionchannel 3.1) (AtGLR2) 7e-6 At1g05200 ATGLR3.4 S.X. H.G.
0.70 88.4 Os02g0644900 AK066709.1 - Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2 1e-12 At2g47600 ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER) S.X. H.G.
0.67 87.2 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) S.X. H.G.
0.63 82.7 Os07g0489300 AK060228.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e+0 At2g15320 leucine-rich repeat family protein S.X. H.G.
0.61 81.2 Os11g0107400 AK065945.1 - Nodulin-like domain containing protein 1e-9 At5g45275 - S.X. H.G.
0.60 79.7 Os10g0190500 AK070455.1 - Protein of unknown function DUF594 family protein 3e-1 At5g06250 transcription factor S.X. H.G.
0.56 76.3 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) S.X. H.G.
0.41 52.4 Os01g0804400 AK070931.1 - Cytochrome P450 family protein 2e-1 At1g34540 CYP94D1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM421681 XOC, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.5 98.3 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4 98.1 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4 98.1 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.8 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.1 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.75 3e-140 498 Os10g0191650 9638.m01033 - - 4e+0 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) C.G. S.X.
0.34 5e-145 513 Os11g0708500 AK063409.1 - Vitamin B6 biosynthesis protein family protein 3e-9 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.31 9e-122 436 Os07g0100200 AK073305.1 - Pyridoxin biosynthesis protein PDX1 (Sor-likeprotein) 1e-11 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-3 42 Arabidopsis thaliana At5g01410 831738 RSR4 (REDUCED SUGAR RESPONSE 4) Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. - - - C.G. S.X.
0.29 9e-72 270 Glycine max Gma.4425.2.S1_at BF068497 - - 6e-19 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.29 6e-86 315 Hordeum vulgare Contig3919_at Contig3919 - - 3e-21 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.07 2e-1 36 Populus trichocarpa PtpAffx.215694.1.S1_at pmrna30044 hypothetical protein - 3e+0 At1g06980 unknown protein C.G. S.X.
0.41 1e-70 266 Triticum aestivum Ta.21403.2.S1_at BJ256106 - - 2e-6 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.06 1e-5 48 Vitis vinifera 1611124_at CA818028 similar to Probable pyridoxal biosynthesis protein PDX1 - 5e-60 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.29 1e-49 194 Zea mays Zm.17428.1.A1_at CK145261 pyridoxin biosynthesis protein ER1 - 9e-1 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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