CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0566500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os01g0566500 AK058473.1 - Dioxygenase RAMOSUS1 1e+0 At4g32810 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) S.X. H.G.
0.50 68.0 Os06g0564000 AK107513.1 - Hypothetical protein 4e-1 At4g30670 unknown protein S.X. H.G.
0.50 68.0 Os06g0594600 9634.m03767 - Transferase family protein 3e+0 At3g44950 glycine-rich protein S.X. H.G.
0.44 58.1 Os03g0108300 AK061126.1 - Cellulase (EC 3.2.1.4) 6e-4 At4g30270 MERI5B (meristem-5) S.X. H.G.
0.44 58.1 Os01g0545100 AK065915.1 - Hypothetical protein 8e-10 At1g09540 MYB61 (MYB DOMAIN PROTEIN 61) S.X. H.G.
0.31 34.5 Os03g0234900 AK104936.1 - Peroxidase (EC 1.11.1.7) 2e-1 At3g32980 peroxidase 32 (PER32) (P32) (PRXR3) S.X. H.G.
0.26 25.6 Os04g0165000 AK107984.1 - Thaumatin, pathogenesis-related family protein 3e-2 At1g75050 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.3 99.9 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
37.0 99.8 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
21.3 99.2 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
17.2 98.8 GSM421672 XOC, 4 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.6 98.1 GSM421712 MOCK, 4 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4 98.1 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
9.6 97.9 GSM421696 XOO, 8 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.4 97.9 GSM421668 XOC, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.5 97.7 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
8.5 97.7 GSM421692 XOO, 4 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-102 375 Os01g0746400 NM_191187.1 - Conserved hypothetical protein 2e-4 At4g32810 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) C.G. S.X.
0.03 5e-4 48 Os07g0579100 AK066662.1 - Conserved hypothetical protein 3e-2 At5g43620 S-locus protein-related C.G. S.X.
0.01 1e-1 40 Os10g0563900 AK107529.1 - Cyclin, N-terminal domain containing protein 5e-1 At3g01800 ribosome recycling factor family protein / ribosome releasing factor family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 36 Arabidopsis thaliana At4g32810 829417 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.CL728Contig1_s_at PsAffx.CL728Contig1 - - 1e+0 At1g23205 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare HVSMEf0021H03r2_s_at HVSMEf0021H03r2 - - 2e-2 At5g04080 unknown protein C.G. S.X.
0.06 9e-5 50 Populus trichocarpa PtpAffx.206717.1.S1_at pmrna13339 hypothetical protein - 6e-8 At4g32810 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) C.G. S.X.
0.13 3e-10 67 Triticum aestivum TaAffx.24230.1.S1_at CA723421 - - 3e+0 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1607372_at BQ796045 - - 7e-1 At5g16100 unknown protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.1943.1.A1_at BM080868 - - 6e+0 At3g28440 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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