CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0560000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os01g0560000 AY187620.1 - Auxin conjugate hydrolase (ILL5) 2e-4 At1g51780 ILL5 S.X. H.G.
0.38 46.9 Os04g0677500 D21297.1 - Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK) 1e-4 At3g04050 pyruvate kinase, putative S.X. H.G.
0.13 8.2 Os12g0145700 AK071391.1 - Pyruvate kinase family protein 2e-63 At3g52990 pyruvate kinase, putative S.X. H.G.
0.01 0.5 Os05g0323900 AU173300 - Manganese-superoxide dismutase precursor (EC1.15.1.1) 3e-1 At5g55560 protein kinase family protein S.X. H.G.
0.01 0.5 Os01g0921400 AK099844.1 - Exo70 exocyst complex subunit family protein 2e-2 At5g50380 ATEXO70F1 (exocyst subunit EXO70 family protein F1) S.X. H.G.
0.01 0.5 Os10g0564800 CA766884 - Calcium-binding EF-hand domain containing protein 7e-6 At5g47100 CBL9 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.7 98.8 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
14.4 98.6 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
14.0 98.5 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
8.2 97.7 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
7.6 97.5 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
5.6 96.9 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
5.5 96.8 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
5.1 96.6 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
5.0 96.6 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
4.5 96.3 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-12 75 Os04g0521800 AK103369.1 - IAA-amino acid hydrolase homolog ILL3 3e-3 At3g02875 ILR1 (IAA-LEUCINE RESISTANT 1) C.G. S.X.
0.09 2e-18 95 Os06g0691400 AK107208.1 - IAA-amino acid conjugate hydrolase-like protein(Fragment) 3e-4 At1g44350 ILL6 C.G. S.X.
0.09 3e-11 71 Os07g0249900 AK110676.1 - Hypothetical protein 6e-2 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.09 5e-7 57 Os07g0249700 AU057170 - IAA-amino acid hydrolase 1 (EC 3.5.1.-) 3e-3 At5g56660 ILL2 C.G. S.X.
0.07 2e-18 95 Os01g0706900 AK105646.1 - Auxin conjugate hydrolase (ILL5) 2e-1 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.04 1e-10 69 Os07g0249800 AK110647.1 - IAA-amino acid hydrolase 1 (EC 3.5.1.-) 2e-10 At5g56650 ILL1 C.G. S.X.
0.02 2e-3 46 Os07g0524200 AK108285.1 - Harpin-induced 1 domain containing protein 4e-1 At5g03890 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-4 48 Arabidopsis thaliana At1g51780 841604 ILL5 encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and is very similar to IAR3. - - - C.G. S.X.
0.07 9e-14 79 Glycine max GmaAffx.65167.2.S1_x_at BU082769 - - 8e-17 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.60 0 1197 Hordeum vulgare Contig7041_at Contig7041 - - 2e-7 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.22 3e-44 180 Populus trichocarpa Ptp.3067.1.S1_at AJ744954.1 iaa-amino acid hydrolase 11 - 9e-44 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.60 0 1134 Triticum aestivum Ta.7272.1.S1_at CD863612 auxin amidohydrolase - 4e-6 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.07 3e-4 46 Vitis vinifera 1619610_at CB008850 hypothetical protein LOC100262106 - 4e-20 At5g56660 ILL2 C.G. S.X.
0.57 0 1043 Zea mays Zm.16472.2.S1_at AI666038 hypothetical protein LOC100274316 - 1e-15 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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