Gene omics information

Query gene ID Os01g0559100
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5068.0Os01g0559100AK105730.1-Seryl-tRNA synthetase (EC 6.1.1.11)1e-3At5g27470seryl-tRNA synthetase / serine--tRNA ligaseS.X.H.G.
0.6382.7Os05g0558900AK101679.1-Phenylalanyl-tRNA synthetase beta chain (EC6.1.1.20) (Phenylalanine-- tRNA ligase beta chain)(PheRS) (HSPC173)5e-6At1g72550tRNA synthetase beta subunit family proteinS.X.H.G.
0.5269.6Os03g0825700AK067902.1-Defective in exine formation6e-40At3g09090DEX1 (DEFECTIVE IN EXINE FORMATION 1)S.X.H.G.
0.4253.9Os05g0581800AK100204.1-Protein of unknown function DUF1296 family protein2e+0At1g07485unknown proteinS.X.H.G.
0.4152.4Os08g0323000AK064573.1-Conserved hypothetical protein5e-5At5g61970signal recognition particle-related / SRP-relatedS.X.H.G.
0.4051.1Os06g0198800AK064781.1-Synaptobrevin family protein3e-13At1g11890SEC22S.X.H.G.
0.3846.9Os03g0810600AK101920.1-Ras small GTPase, Ras type family protein3e-23At5g27540MIRO1 (Miro-related GTP-ase 1)S.X.H.G.
0.3644.0Os10g0476600AK067811.1-Protein phosphatase 2A 62 kDa B'' regulatorysubunit (Protein phosphatase 2A 62 kDa B regulatorysubunit)4e-50At5g28850calcium-binding EF hand family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.096.6GSM275408Bala root tip_At the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.896.5GSM275416Azucena root tip_Before the wax layer_Rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.796.4GSM275410Bala root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.596.3GSM275414Azucena root tip_Before the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.695.5GSM275409Bala root tip_At the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.595.3GSM275415Azucena root tip_Before the wax layer_Rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.495.2GSM275413Azucena root tip_Buckled at the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.495.2GSM275407Azucena root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.194.8GSM159184Y Leaf, biological rep 2GSE6893Expression data for reproductive development in rice
3.094.6GSM275406Azucena root tip_At the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8201762Os03g0198400AK103101.1-Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNAligase) (SerRS) (Fragment)6e-2At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.6901314Os01g0559200AK102611.1-Hypothetical protein4e-2At2g46140late embryogenesis abundant protein, putative / LEA protein, putativeC.G.S.X.
0.033e-138Os03g0602015NM_184840.1--5e-1At1g58150unknown proteinC.G.S.X.
0.011e-140Os03g0215000AK100038.1-Conserved hypothetical protein6e-14At1g76340integral membrane family proteinC.G.S.X.
0.013e-138Os01g0113000AU069831-Peptidase C48, SUMO/Sentrin/Ubl1 family protein2e+0At5g66400RAB18 (RESPONSIVE TO ABA 18)C.G.S.X.
0.013e-138Os01g0113100NM_183553.1-Peptidase C48, SUMO/Sentrin/Ubl1 family protein1e+0At5g66400RAB18 (RESPONSIVE TO ABA 18)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.067e-446Arabidopsis thalianaAt5g27470832806seryl-tRNA synthetase / serine--tRNA ligaseF:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAP---C.G.S.X.
0.233e-1997Glycine maxGma.9981.1.S1_atCD398725--9e-46At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.7001100Hordeum vulgareContig5144_atContig5144--7e-14At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.084e-654Populus trichocarpaPtpAffx.17411.1.S1_atCV242125hypothetical protein-6e-45At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.7101043Triticum aestivumTa.20463.1.S1_atBT009342.1--2e-5At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.156e-1167Vitis vinifera1613593_atCB975406hypothetical protein LOC100261399-9e-34At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
0.600765Zea maysZm.15927.1.S1_atCO523705seryl-tRNA synthetase1-5e-9At5g27470seryl-tRNA synthetase / serine--tRNA ligaseC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage