CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0550800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0550800 AK064194.1 - Protein of unknown function DUF239 domaincontaining protein 2e-4 At2g19360 unknown protein S.X. H.G.
0.84 96.0 Os01g0652300 AK063136.1 - Hypothetical protein 5e+0 At1g30475 - S.X. H.G.
0.76 92.2 Os03g0320100 CF280794 - Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein 1e-15 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) S.X. H.G.
0.68 87.5 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein S.X. H.G.
0.67 87.2 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein S.X. H.G.
0.64 83.4 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) S.X. H.G.
0.61 81.2 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein S.X. H.G.
0.59 78.0 Os01g0218100 AK068593.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e+0 At5g24890 unknown protein S.X. H.G.
0.58 77.0 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 S.X. H.G.
0.58 77.0 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.8 99.4 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
20.0 99.1 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
16.7 98.8 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
15.7 98.7 GSM359904 FL478 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.4 98.7 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.9 98.6 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.4 98.6 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.0 98.5 GSM100440 Rice Azucena 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.0 98.2 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.1 98.0 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-12 75 Os07g0573400 AK121705.1 - Protein of unknown function DUF239 domaincontaining protein 8e-42 At3g13510 unknown protein C.G. S.X.
0.06 3e-1 38 Os06g0474500 AK104980.1 - Protein of unknown function DUF239 domaincontaining protein 5e-24 At1g10750 unknown protein C.G. S.X.
0.01 4e-1 38 Os01g0678500 AB100696.1 - Two-pore calcium channel 4e-7 At4g03560 ATTPC1 (TWO-PORE CHANNEL 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-4 48 Arabidopsis thaliana At2g19360 816453 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB - - - C.G. S.X.
0.05 2e-5 52 Glycine max GmaAffx.89865.1.A1_s_at CK606142 - - 1e-39 At3g13510 unknown protein C.G. S.X.
0.08 2e-2 40 Hordeum vulgare Contig5275_at Contig5275 - - 3e-22 At3g13510 unknown protein C.G. S.X.
0.05 1e-3 46 Populus trichocarpa PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein C.G. S.X.
0.13 2e-35 151 Triticum aestivum TaAffx.54050.1.S1_at CA686390 - - 2e-1 At1g10750 unknown protein C.G. S.X.
0.03 1e-6 54 Vitis vinifera 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein C.G. S.X.
0.13 9e-5 48 Zea mays Zm.10376.1.S1_at BQ538350 - - 2e-11 At3g13510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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